MmuINT0066475 @ mm9
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31450770-31452171:+
Coord C1 exon
chr2:31450770-31450841
Coord A exon
chr2:31450842-31452113
Coord C2 exon
chr2:31452114-31452171
Length
1272 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTCTTGATTCTTCTTATAGAGA
3' ss Score
7.11
Exon sequences
Seq C1 exon
TTATTGGCAGGGGAGGTGAGCAGATTTCACGAATTCAAGCAGAATCTGGGTGCAAAATTCAGATTGCCTCAG
Seq A exon
GTAAGGGCTACTTTCCTCATAGATTCATTTAGTAGAAATCAGTGTTTGACAGCAGTTTCCACAATCTGTGTCTGCTTTTGGTTAGAAGCTAGGGTAAGTATGTGTGATTGCTGTCTGTTTTGCACTTCTGGGGTTGGACCCCACCTGAGCACCAAAATCAAAAGCCAGCCTGGTAATGAGGTTCACGCCTGCCTCCTAGGGCAACACTCAACTCTGGCCAGTGTGGCCTCCTCCTCCTAACACCTGCTGGCTGGGCTAAGACATATGTTTTCTGCACCAGAATGTGATGCCAGGCATAGTGGGGCCTGCACCCAGCTTCCCTGTACAAGACCATCCTTCCACTTTGTGGGGAGGACAGTAGGGCTCCTGGCTGAGTGGGGGTCAGACACCTTTCTGGACTGCTCAGACATTCTTTCAGTTCTGACCATTTGACGTTGAAAGACACTGGTTAAAGAACAGTTTTATTTGAGTTGTAGTTTTAGTATGTCATCCGAGTGTGTCCTCGCTCCATTTGAGAGGAGGAGAGGTCTGGAGACATTCCTGTAGAGAACGTTCGTCATTTATACAATACTCACTTCAGTGTCTTAAAAGCAGTAATGGCTCTTAGCGATTTGTCTTGAGGATTTTTTGTTGGTTTTTACAGTGCCAGGGAGTAAAAACAGTTTACATACATAGGCTAGGCGAATGCAAGCTCCCTCTTTCAGTGTTTTGAGAAAAGATTTTTAAGGAGTTTTTAGGGTCAGTTTAAAACATATGGGTAAATAAATAAAACATGTGGGTGTTGGAAACAAAGGGTTTTCTCTCCTGTCAAATGGCCCAGAGACCAGTAGCACATCCCTGCTGCCGATTTCTTGGGATGTGAATACAATAAATGCTGTAATCCTGGCGTGTTTATAAAGTCCTGAGTACACCGCAGAGCCGTCTGCAGGCTGGTGACTATGGAGCTGCTCTGCACACAGTGTGAGGGAAACCTGAGGGAGTGACTGCAGTGCTAAGGAGCCTCTGGGCAAGTCCGAGTGAGTGGGGCTTGGTAATTAGGACCAACTCACAGAGCTCTGCTGTGTCCTGCTGGCTCTCTGTGGGACTCAGTCTCTAGGTTGAGAACTAAAGTTCTGTCCCCCAGCAAAGCAAACTGGTCTTTTTGGGAGACTGTGCTTCTGTGGGGGTGGTGTAGGAACCAGCCCCAGAGAGAGACAGTCTACACACAGAGGCAAAGGCACACAGCTGCCTGATGCCCACCAACACACCTCATCTTCTTGATTCTTCTTATAG
Seq C2 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-Fubp3:NM_001033389:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(30.0=75.0)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: