GgaINT0124289 @ galGal3
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
NA
Coordinates
chr17:6025032-6025645:+
Coord C1 exon
chr17:6025032-6025166
Coord A exon
chr17:6025167-6025591
Coord C2 exon
chr17:6025592-6025645
Length
425 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
3' ss Seq
GGTCTCTTTGTTAATTGTAGGCC
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTGGTGTGCATGAGTTTCTTTGATATTGTGCTAGACTTTATCCTCATGGATGCTTTTGAGGATTTGGAGAATCCCCCCTCCTCTGTGCTGGCTGTGCTGCGCAACCGTTGGCTGTCGGATAGCTTCAAGGAGACG
Seq A exon
GTGCGTTAACCGGGCCGTCTTTGTGTCCAGCAGTGCCAAAGCTAGGAAGGATGATTACCTATCACTTTGACTGGCCTGGTAGAATGGTGTGTTCTCTTTAGAAACACCATGTTTTCTTGAAACTCTAAACAGCAGTCCTCTAGTACGTGTAAATCTTTCAACAGCTATCTGCTTGAAGTCTGTATTCTGGGGCATGTGGCAGCTATGCCAGATTGTATTAGAGATCTTCAAAGACACTTTGGTTTGTCTGGAGTGGGTCTGTAGTGGCCAAACGTGCTTCCAGCTCGTATAGATTTTTCCTAACTAATTTTAGAGTTGTTGGCACGAAGGGGCCACTGCTTTGATATTTTGATGGCAATGTGTTGGCAGGCTGTTTTCTTCAAAAGTGTAATCCCAGCAAATGATGGTCTCTTTGTTAATTGTAG
Seq C2 exon
GCCCTAGCAACTGCCTGCTGGTCTGTTCTGAAAGCAAAAAGGAGGCTTCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGCATGAGTTTCTTTGA
R:
AGCCTCCTTTTTGCTTTCAGA
Band lengths:
182-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]