HsaINT0061435 @ hg19
Intron Retention
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131830477-131831408:+
Coord C1 exon
chr9:131830477-131830611
Coord A exon
chr9:131830612-131831354
Coord C2 exon
chr9:131831355-131831408
Length
743 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
ACATCCTATTTTTGATGTAGGCC
3' ss Score
8
Exon sequences
Seq C1 exon
GTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCTTCGAGGACCTGGAGAACCCTCCGGCCTCGGTGCTCGCCGTCCTGCGGAACCGCTGGCTGTCAGACAGCTTCAAGGAGACG
Seq A exon
GTGGGTCACTGCCCTGCTCTCAGACCCACACTTGCTCACATCAGCCCGTGTGGTTGCCTGGCTCCGTCCCCTCTGTCCCTAGCACTGGCACCAGGGCTGGGCCCCCACCCCCTAGATCCGCGGCTGCCAGGCCTGGGAGACCAGAGTCTGCCCTGGAGAAGCCTCCAGGGTGCCCCGTTGCTGCCTGGTGCCCCAGTTTAGAACCAACATGGTGTGCGCTTTCTTCCTATTGTGTGGTTTTACTTTTGTGCTGGTATGAATTCGATTCCATTTTAATGCATCCTGTTAAATCAAGTTAAAAGAGGGGAAAGCAAAACCAAAAGGAAAAAAAGGCACAGAGTGAGAGACAACCCAGCACAGGACCCCCAGGAAGGCAAGCAGTAACGCTCCAGCAGCCGGGCTGTGCTGCCTGGGCCCAGGCTTCTGCGAGGTGGTTTACAGGCGGGAACCATTGCTCCCACAACCACCAAAGGAGGTGGGAGTGCTGTGTTGTGCCCCTTTACAGAAGAGGAGACCGAGGCTCAGAGAAGATCCAGCAGTAAGATTAGAGTCAAGATTCAAGTTTAGGTATGTCTGAGTCCAAAATCAGAGGAGGAAGCAGCAGAGCTTAGGCACCTGGCCCCATCTTCCTGCTTGGAGTGGGGTGAGCTGGGTTTAAGGGCTTGGTGCTGGGCTGGCAGAGGGCGAGGGGCTGTGGGCTAGGCCCATTTTGACACCCGGGGGACATCCTATTTTTGATGTAG
Seq C2 exon
GCCTTGGCCACTGCTTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-FAM73B:NM_032809:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGCTTCTTCGACATCG
R:
CATCAGCAGCCTCCTCTTGG
Band lengths:
182-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)