GgaINT1012982 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5469641-5470254:+
Coord C1 exon
chr17:5469641-5469775
Coord A exon
chr17:5469776-5470200
Coord C2 exon
chr17:5470201-5470254
Length
425 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
3' ss Seq
GGTCTCTTTGTTAATTGTAGGCC
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTGGTGTGCATGAGTTTCTTTGATATTGTGCTAGACTTTATCCTCATGGATGCTTTTGAGGATTTGGAGAATCCCCCCTCCTCTGTGCTGGCTGTGCTGCGCAACCGTTGGCTGTCGGATAGCTTCAAGGAGACG
Seq A exon
GTGCGTTAACCGGGCCGTCTTTGTGTCCAGCAGTGCCAAAGCTAGGAAGGATGATTACCTATCACTTTGACTGGCCTGGTAGAATGGTGTGTTCTCTTTAGAAACACCATGTTTTCTTGAAACTCTAAACAGCAGTCCTCTAGTACGTGTAAATCTTTCAACAGCTATCTGCTTGAAGTCTGTATTCTGGGGCATGTGGCAGCTATGCCAGATTGTATTAGAGATCTTCAAAGACACTTTGGTTTGTCTGGAGTGGGTCTGTAGTGGCCAAACGTGCTTCCAGCTCGTATAGATTTTTCCTAACTAATTTTAGAGTTGTTGGCACGAAGGGGCCACTGCTTTGATATTTTGATGGCAATGTGTTGGCAGGCTGTTTTCTTCAAAAGTGTAATCCCAGCAAATGATGGTCTCTTTGTTAATTGTAG
Seq C2 exon
GCCCTAGCAACTGCCTGCTGGTCTGTTCTGAAAGCAAAAAGGAGGCTTCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(3.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGCATGAGTTTCTTTGA
R:
AGCCTCCTTTTTGCTTTCAGA
Band lengths:
182-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]