RnoINT0092524 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8947470-8948682:+
Coord C1 exon
chr3:8947470-8947604
Coord A exon
chr3:8947605-8948628
Coord C2 exon
chr3:8948629-8948682
Length
1024 bp
Sequences
Splice sites
5' ss Seq
ACAGTGGGT
5' ss Score
2.99
3' ss Seq
GGGTCTTACCTGTGTTTTAGGCC
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGGCATGCATGAGCTTCTTCGACATCGTGTTGGACTTCATCCTCATGGATGCCTTTGAGGACCTAGAGAACCCTCCATCTTCGGTGCTTGCTGTCCTGCGGAACCGTTGGCTGTCTGATAGCTTCAAGGAAACA
Seq A exon
GTGGGTGCCCATCCCTTTCCCATGTGTGTGTGCCCTGTGACCTTCGGCACTGTCCTCTCAGTGTCCTCTTATGTATTCCCAGAGTTCATTTATCAGTCCCTGCCCACTGAGATGTGGGCTGTCTCCAGGCACTCAGGCACTCCCTGCTGCCCAGTTCCTGCAGTGCGCACATTTCCCTCTGTGTTGTCCTCACAAGAGGCAGAGCCCCCACTCTGGATGGGCACTAAGTACTTTCATTTTAATGCATCCCATTAAGTTAAAATAGAGGAGAACCTCCGCCCACTCACCCCCAACAATGACAACAAAACCCAAGGCTACCAGTAATATGGTGGTTCTGCTGCCCATGACTCTTCTCCAACAAGGCCATTTATAGATGCTCATGGTGGCTCCTGCAACCACCGGGTGAGGGGTTGGGGTGCTGTGTCATGACCATTTTACAGAGGAGGAAACAGGCTTGGGAAGCTTCCACATCTAAATGAAGTTCTAAAGCAGTAAGAGTTAGAGCCTGGTTTCAAGAATAGGTGTGTATAGGGCCAAGGAGGGCTTGCAGTACAGTGCTCACTGCTCATTAGGACCCGGGCTTGGCTCCTAATGCTTACATAGTTCACAGACACCTGTGAGTCCAGCTCCAGGGGATTCGGTGTCCGTCTCCTGTCGGCTCCTGCAGACATGCAGTGCACAAACTCATACAGCGCACACATATGTAAAGTAAAGAAGTAGGCATCTGGCCTGGTGGTGGTGGTGGTGCACACTGTTAGTCTCAGCACTCCGGTGACAGAGGCAGGCAGAGCTCTCTGAATTCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAACAAAACAAACAAACAATTAGGCATCTGTTGCCAGATATGGGGTAAAGAAAAAGCACAGTTAGGTGTGGGTGGGTTGTGGGCAGAGCTCATCCTGGGCCAAGGCTGGGGCTCTGGGTTATCCTTGATGGGGTCTTACCTGTGTTTTAG
Seq C2 exon
GCCCTGGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(9.6=100)
A:
NA
C2:
PF102654=DUF2217=FE(3.7=100),PF102654=DUF2217=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGCATGAGCTTCTTCGA
R:
CATCAGAAGCCTCCTCTTGG
Band lengths:
187-1211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]