GgaINT0124294 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:883159-883643:-
Coord C1 exon
chr17:883601-883643
Coord A exon
chr17:883230-883600
Coord C2 exon
chr17:883159-883229
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CATTCTTCCTTGCCTTGCAGCCC
3' ss Score
10.98
Exon sequences
Seq C1 exon
TCCTAGGAGAGGATGAGCTGGAGGTCTCCTATGCTGCCCCCAG
Seq A exon
GTAAGTGCCAGGTGCTTCTCTCTCTGGGCTTTGGTCAGTGGGTGCCCACCCGGGTGCCCCTACCCAGTACACCCACAAACCTGGAGGGAGACTGAATTGGGGCACCAGCTGTCAGCAGCTGAAGGTCTCCTCTGCTGCCCCATGTAAGTGCCATGTTCTATTCTCCCTGTCCTGCTCTGGCACCCATTGCTGCACGAGTGGCAGCTCTCCCCAGGACACAGCATCCTCTATCAGCACCTCCTGTGTTGGAGGTGTGACCCCGACTCCAGAGCTTGTGTCCTGGGGTGGGGAACGTCAACCCAGCAGGGACAAAACCAGATGGCTCTGAGCACACCTTCATGCGTGACAGGGCATTCTTCCTTGCCTTGCAG
Seq C2 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011:ENSGALT00000040489:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(18.6=91.7)
A:
NA
C2:
PF0006118=Lipocalin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]