GgaINT0124294 @ galGal4
Intron Retention
Gene
ENSGALG00000024011 | Ex-FABP
Description
extracellular fatty acid-binding protein precursor [Source:RefSeq peptide;Acc:NP_990753]
Coordinates
chr17:503922-504503:-
Coord C1 exon
chr17:504364-504503
Coord A exon
chr17:503993-504363
Coord C2 exon
chr17:503922-503992
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CATTCTTCCTTGCCTTGCAGCCC
3' ss Score
10.98
Exon sequences
Seq C1 exon
GTTGCAGGGAAATGGTATATTGTTGCTCTGGCCTCCAACACCGACTTCTTCCTGCGTGAGAAGGGCAAGATGAAGATGGTAATGGCCAGAATCTCTTTCCTAGGAGAGGATGAGCTGGAGGTCTCCTATGCTGCCCCCAG
Seq A exon
GTAAGTGCCAGGTGCTTCTCTCTCTGGGCTTTGGTCAGTGGGTGCCCACCCGGGTGCCCCTACCCAGTACACCCACAAACCTGGAGGGAGACTGAATTGGGGCACCAGCTGTCAGCAGCTGAAGGTCTCCTCTGCTGCCCCATGTAAGTGCCATGTTCTATTCTCCCTGTCCTGCTCTGGCACCCATTGCTGCACGAGTGGCAGCTCTCCCCAGGACACAGCATCCTCTATCAGCACCTCCTGTGTTGGAGGTGTGACCCCGACTCCAGAGCTTGTGTCCTGGGGTGGGGAACGTCAACCCAGCAGGGACAAAACCAGATGGCTCTGAGCACACCTTCATGCGTGACAGGGCATTCTTCCTTGCCTTGCAG
Seq C2 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011:ENSGALT00000040488:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.9=95.7)
A:
NA
C2:
PF0006118=Lipocalin=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGGAAATGGTATATTGTTGC
R:
GTAGTAGACTTCACCATCATCACTGG
Band lengths:
206-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]