GgaINT0124425 @ galGal3
Intron Retention
Gene
ENSGALG00000004927 | COQ4
Description
NA
Coordinates
chr17:5617939-5618768:-
Coord C1 exon
chr17:5618573-5618768
Coord A exon
chr17:5618036-5618572
Coord C2 exon
chr17:5617939-5618035
Length
537 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
3' ss Seq
CTGTGCGGCCTCTCTTTCAGACA
3' ss Score
9.97
Exon sequences
Seq C1 exon
CCGCCTCTCCCCGCAGGCAGAGCCGGGTTGGGCCGCGCCGTGCCCCGCGCTGAGGAGGAGGAGGAGGAGGAGGAAGAGCGGCAGCGGGGGGGGCGCGTCCCGCTGTACCCCGGGCACATCCCCACCACCCCGCTGCAGAAAGCGCTGCTGGCGGCCGGCTCGGCGTGCGCGGCGCTGTGGGACCCCTACAGGCACG
Seq A exon
GTGCGTGGGGACGGGGCACGGAGCGGGGCCTGAGGGAGCTGGGATGGCTCACAGTGGAGCAGAGGAAGCTCGGGGGAGACCTCATCGCTCCCTGCAATCCCTGAAAGAAGTTGTGGTGAGGTGGGGTCGGCCTCTGCTCGCAGGGAACAGCCATAAGATGAGCGGTGACGGCCTCACGTTGTGCTGGGGGAGTTCAGGTTGGGTACTGGGGAAGGTTTCTTCTCAGAAGGAGCGGTGCTGCGGTGGCACAGCTGCCCAGGGAGTGCTGGGGGCACCGTCCTGGTGGTGTTCCAGACCCATGGAGATGTGGCACTGAGGGCCGTGTCAGTGGGCACAGTGGGGTGGGCTGGGGTTGGACCTGGGGGTCTGAGAGGGCTTTTCCAACCTGAGTGATTCTGTGAGCCGCTGCCAAGCAGATCTGCAGCGCTCGGTGCCCCCTTTCCCCCCCTGTCAACAAAACGTGTCCGGGCATCACGAATGCAAAACACGTGCAGGGATTTGTGCTGCTGCTGTGTCACTGTGCGGCCTCTCTTTCAG
Seq C2 exon
ACATGGTGGCGGTCCTCGGCGAGACCACGGGCTGCCTTGCCCTGCCCAAGCTGCGAGACAGGATGAGGAATGACCCCGAAGGTTACCGCATCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927:ENSGALT00000007881:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=45.5)
A:
NA
C2:
PF050198=Coq4=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGGAGGAGGAGGAG
R:
TGGAGGATGCGGTAACCTTCG
Band lengths:
246-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]