RnoINT0040867 @ rn6
Intron Retention
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8349542-8350835:+
Coord C1 exon
chr3:8349542-8349673
Coord A exon
chr3:8349674-8350738
Coord C2 exon
chr3:8350739-8350835
Length
1065 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
GCCCATCTTTGTCCTTTTAGACA
3' ss Score
9.35
Exon sequences
Seq C1 exon
ATGTGCTCCTCAGGGCCGCGAGCCATGGCGCCCGCCTGCTGTACCCAGACCACATCCCTACTACGCCGCTGCAGAAGATGCTGCTGGCCGCCGGCGCGGCGGGAATGGCGCTCTACAATCCCTATCGCCACG
Seq A exon
GTAAGGCCGTTCACTCCTCGGTCTCGAAAGCTCCGGCCGGTCCAGACTTCTGTCAAGGCCTTGGTTTGTGGGCATCCAAACATGGCTGTGCCTATCCTATAACTCCTAGGAACGTTTATGATAACCAGGTGCCTGATTCTCACCAGAACTGTTACGAATCTGCTGGGTACAGGGAGGAGAGGAGGAAAGAAATGTAAGATCTACAGGTCTTCTTTTTTTGTAAGTCTTGGGAGAATCTGTCATCCAAGCATATTAATCTCTGGGCTGAATGACTTACAGGTGCACACCACATTACAACATTCTCACTGGGTAGTAAGTAAACTTGGTAAGGTCAAGGATCATGATCTTCAGGCTTTTCTTTTTGAAACAGTTCAGGGCCAACTTCTTATTCCGTACACAATTAATCTTGTTTGAAGAAAGAAAAGAAAATGGGAGGAAGAGAAAGACGACATGTGAAGTGGCTTATATAGGATCTGGTGACTGCACCTGGACTCAACTCTAGCACCATTTTTTAAAAAATTGTTTTGTTGAGACATGGTCTCATGTAGACTGAGCTGGCCCCTAACTCCATAGATAGCCAAAGATGACTTTGAATTTCTGATCGCCCTGCCTCCCTAACCCTGAATGCTGGTAGTACAGGTGTGTGCCACCATGCCCAGTTTATATGATTCTGGGAACAAAACTCAGGGCTTTGAGTGTGCTAAGCATGCACTGTGTCAGCTCAGTTACTGATGTCCATCACCATTCAATCTCAAGACCTGTACTAGTCGGTGGAAACATGACAGTCTGTCTTGATAATGGGCTAACAAAGTGGTTCATACTGTTAATGAAAGCCACCATATTCCAATAGATTTGTAATGTCAAGAATAACAGCTAGCTGTCCTAATGGTGTCGGCCTTTAATGTAGCGCTTGGGAAGCAGAGGCAGGAAGATCTCTGAGTCTGGGCAAACCTGGTGGACATAGTGAGTTCCAGGACAGCCTGTACTACAAAAAGAGAATGTCTCAAACAAACAAACAAACAAACAAATTCCATCCTTTCTCTTTGCCCATCTTTGTCCTTTTAG
Seq C2 exon
ACATGGTTGCAGTTCTAGGGGAGACCACAGGATGCCACACCCTGAAATTCCTCAGGGACCAGATGAAGAAGGATCCAGAGGGTGCCCAGATTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691:ENSRNOT00000038602:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF050198=Coq4=PU(13.5=66.7)
A:
NA
C2:
PF050198=Coq4=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTCCTCAGGGCCG
R:
GGCACCCTCTGGATCCTTCTT
Band lengths:
218-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]