GgaINT0124522 @ galGal4
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6230253-6230542:+
Coord C1 exon
chr17:6230253-6230349
Coord A exon
chr17:6230350-6230449
Coord C2 exon
chr17:6230450-6230542
Length
100 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AAGACATCTGACCATTGCAGGAA
3' ss Score
5.87
Exon sequences
Seq C1 exon
GCATGATGTTGCTGCCCCTCTCAGCCCCCACTCCCAAGAAGTTTCCTGCTATATTGATTATAACATTTCCATGCCAGCACAGAACCTCTGGAGAGTG
Seq A exon
GTGAGTAGGGTAGAGTCAAAGAGAAGGGAAGAGCTCGTCATTTTTTTCACCAGAAGTGGCTGAGACAAAAAGCCAATCAAAAGACATCTGACCATTGCAG
Seq C2 exon
GAAATCGTCAATCGGGAGTCTGACACGGATGTGTGGAAGACCATTCTGTCAGAAGTGAGGTTTGTTCACGTGAACACCTCTGCAGTGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005964:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
NA
C2:
PF0281514=MIR=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGTTGCTGCCCCTCTC
R:
TAGCACTGCAGAGGTGTTCAC
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]