GgaINT0124634 @ galGal3
Intron Retention
Gene
ENSGALG00000001014 | F1P1S6_CHICK
Description
NA
Coordinates
chr17:10304514-10305300:-
Coord C1 exon
chr17:10305214-10305300
Coord A exon
chr17:10304691-10305213
Coord C2 exon
chr17:10304514-10304690
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATTTTCCTTTCCTGTGCAGGAG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACTCGCGCCGTAGAGGCGAAGCGCTGCGCGCGCTCCACGCGGCCCTGCGGAGCGCCCCCGCCCAGACGCGCAGCGCGGCCCTGAAG
Seq A exon
GTGAGTGCGGCCCCGGGGCCCGCGCCGGTAACGAGCGGCATTTCGCGGCGCGGTGCCCCCCGGGCGCCGTCGTCGTGCTCCGCTGCACCTCCCGGTCGTCCGCTCTTGAAGAACGGCGGTGTGATTTGTGCGCGGGGACAGCCCCGTGCTGCTGCGTGCCACAGCGCCCAGGGAGCGGCCCGCGGTGTGGGGAAACGCGCCCGGCAGCATCTGATGGCTGAGAGGAAGTCCTGAAGCGCATCCGAGGGGATCTTGTAGTGTGTTTCTGAAGCAGGACGTTGGTCTTGGATGTAGATTTGTTGCAGGCAATTCTGCAGTGCGCTTCGGGTGCCTCTCCCGAGGTAGGAGTACCAACAAGTCCAGTTTTAAGGAGCTCTTCCCTTCTTTCTTCTCACTACTGAAACTTAAGGTGTAAAACGGTCTCCTGTTTGGCTGCAGCATCTGCTGAGCACTTTGCTGCACGCAGCTCCTGGGGTCGTGTCCAGCTTTGCTGATCCTAACGTCATTTTCCTTTCCTGTGCAG
Seq C2 exon
GAGCAGGCGCAGGGAACCATGCTCAAAGTCCTCACGTCTTTTAAAAGCAGTGAAATCGAACATGCGGTGAACTCCTTAGACAGAAATGGCATTGACTTGTTAATGAAGTATATTTATAAAGGATTTGAGAAGCCGACAGAAAATAGCAGTGCAATATTACTCCAATGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001014:ENSGALT00000001496:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(25.9=96.6)
A:
NA
C2:
PF046999=P16-Arc=FE(53.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]