RnoINT0021337 @ rn6
Intron Retention
Gene
ENSRNOG00000014317 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:RGD Symbol;Acc:1308867]
Coordinates
chr3:23306101-23306879:+
Coord C1 exon
chr3:23306101-23306173
Coord A exon
chr3:23306174-23306702
Coord C2 exon
chr3:23306703-23306879
Length
529 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ACTTTTTTCTTCCTTTGTAGGAA
3' ss Score
12.73
Exon sequences
Seq C1 exon
AGGGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCAATCAACACCAAGAATCAAGCTGTGAAG
Seq A exon
GTAAAGAGGTTGTGCTGCAGCTGTCAGGACCAGGACTTCGTGTCCTTAGCAGCAATTTCAACTCCCTGGCGTCTGGACAGTAACTGCATCACTGGGAGTGTGCTGCTACTTGGCGTTCCCTTTTCACCGAAACCACTTGCTATTTCTCAGATACTGGTGCAGTAGGTAGCTTGATAACTTTGTAATCTGTAAAGTGTAAGGCTTTGTTGATGTATCAAAAGTAGTAATGCTTGAGACTGGGCTAAGCTCAGTGGGTAGAGGGCTTGCCTAGCATATGTATGGTCCTGGGTTCAAGCCCTGACATCATATAAAGTCATATTACCTATAGTAAATCACTTGTTCTTTCCACAGTAAGTGGAATCACTTATTTGTAAAAATAAGTGAAATTTAAAGCCAAAGATGTTTTATCTCACCGATGTAGCTGGGTTGAATTAAAAAGGGTTGGTGTTTCTGGCATGTTTTGTCTATTGGTTTCTGTCGTGTTAGGATTGCAGCTCCTGGCCTTACTCACTTTTTTCTTCCTTTGTAG
Seq C2 exon
GAACGAGCCCAGGGTATAGTCCTGAAAGTACTCACAAACTTCAAGAGCAGCGAGATTGAGCAGGCTGTGCAGTCACTGGACAGGAATGGCATTGACTTGCTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCCACAGAAAATAGCAGTGCAGTGTTACTCCAGTGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014317:ENSRNOT00000019405:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(16.4=100)
A:
NA
C2:
PF046999=P16-Arc=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGACATGCTTCGGGC
R:
TCATGCCACTGGAGTAACACTG
Band lengths:
246-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]