GgaINT0124760 @ galGal3
Intron Retention
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5859249-5859995:+
Coord C1 exon
chr17:5859249-5859339
Coord A exon
chr17:5859340-5859903
Coord C2 exon
chr17:5859904-5859995
Length
564 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
GCATTTCTGTTGTCTTTCAGGTA
3' ss Score
12.26
Exon sequences
Seq C1 exon
CAAATCTTGTTTGTTTGTCTGCAGGAAAGGGGCAGTTCATCTTGAGGATTTTCACTGCATCGCCATGCTGGGACGTGGCCACTTTGGGAAG
Seq A exon
GTATAGAAGTGCTCTCTCTGCAGAGGGCAGCAGGGCTGCTGTTGTAAGGGTGGGCCTCTGCCTCACAGTCTGAATAGAAATGTTGCAGAGATTTGTTGCACTGCGGATTTATGAAGCAAAACCACAAGCAGCTGGTACAGCCAAATCTCTTGAAGATCTGTGGCTTCAAAACGTGGAGGAAACTGTCCAGGGAGTGCCAAACCACCTAATAGAGCACAGTATTACCATTCTTTTCGTTGTCACTGTGATTATTGGTGGAATAGTGTGATTCCCACAAAGTGTACGTATAGGCACTTGCTATAAGTGTATTGAGGTGCTTTTAAAATGCAGGACCAGCTGCAATACTGCTGTTTCTGAAAAAACCATAACTTACAGTGTTGTCTTTCTGGACTGCAGCAGCTCAAGGAGTAGAGAAAAAGAGCTCCATTTTTGGAGCTGCTTGAGCCTGGTTTTAAGAATGGCTGTCTGAAGTGGATGGAAATACATTTTGTCAATGGGAGTCCAAGTAATCCAACAAGGAAATAACAGATTTGTTTGGAATACAGCATTTCTGTTGTCTTTCAG
Seq C2 exon
GTACTCTTGGCCCAATACAAAGCAACTGGGAAGCTGTATGCTATCAAAGCCTTGAAGAAAAAAGATATAATTAGGAGAGATGAAATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689:ENSGALT00000007470:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]