GgaINT0124760 @ galGal4
Intron Retention
Gene
ENSGALG00000004689 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr17:5231742-5232464:+
Coord C1 exon
chr17:5231742-5231808
Coord A exon
chr17:5231809-5232372
Coord C2 exon
chr17:5232373-5232464
Length
564 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
GCATTTCTGTTGTCTTTCAGGTA
3' ss Score
12.26
Exon sequences
Seq C1 exon
GAAAGGGGCAGTTCATCTTGAGGATTTTCACTGCATCGCCATGCTGGGACGTGGCCACTTTGGGAAG
Seq A exon
GTATAGAAGTGCTCTCTCTGCAGAGGGCAGCAGGGCTGCTGTTGTAAGGGTGGGCCTCTGCCTCACAGTCTGAATAGAAATGTTGCAGAGATTTGTTGCACTGCGGATTTATGAAGCAAAACCACAAGCAGCTGGTACAGCCAAATCTCTTGAAGATCTGTGGCTTCAAAACGTGGAGGAAACTGTCCAGGGAGTGCCAAACCACCTAATAGAGCACAGTATTACCATTCTTTTCGTTGTCACTGTGATTATTGGTGGAATAGTGTGATTCCCACAAAGTGTACGTATAGGCACTTGCTATAAGTGTATTGAGGTGCTTTTAAAATGCAGGACCAGCTGCAATACTGCTGTTTCTGAAAAAACCATAACTTACAGTGTTGTCTTTCTGGACTGCAGCAGCTCAAGGAGTAGAGAAAAAGAGCTCCATTTTTGGAGCTGCTTGAGCCTGGTTTTAAGAATGGCTGTCTGAAGTGGATGGAAATACATTTTGTCAATGGGAGTCCAAGTAATCCAACAAGGAAATAACAGATTTGTTTGGAATACAGCATTTCTGTTGTCTTTCAG
Seq C2 exon
GTACTCTTGGCCCAATACAAAGCAACTGGGAAGCTGTATGCTATCAAAGCCTTGAAGAAAAAAGATATAATTAGGAGAGATGAAATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689:ENSGALT00000007470:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=56.5)
A:
NA
C2:
PF0006920=Pkinase=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]