GgaINT0124772 @ galGal3
Intron Retention
Gene
ENSGALG00000005063 | ST6GALNAC4
Description
NA
Coordinates
chr17:5506979-5507302:+
Coord C1 exon
chr17:5506979-5507086
Coord A exon
chr17:5507087-5507157
Coord C2 exon
chr17:5507158-5507302
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCCCCGCGGTGCCCACAGGGA
3' ss Score
7.33
Exon sequences
Seq C1 exon
GGTGAAATCCGGCTCCTTCCTGAGCACAGGGTGGTTCACCATGATCCTGGCCATGGAGCTGTGCGAGCACATCTGCGTCTTCGGCATGGTCAGCGACAGCTACTGCAG
Seq A exon
GTGAGGGGCTGGGGGTGGCAGCGGGGGCTGCGGGGGGGCGCAACCCTGCTCAGCCCCCGCGGTGCCCACAG
Seq C2 exon
GGAGAAGAACCACTCGAGCGTGCCTTACCACTACTTCGAGAAGGGGCGGCTGGATGAGTGCAGGATGTACAAGGTGCACGAGAGGGCCCCCCGCGCCGGGCACCGCTTTAAAAGGGAAAAAGCCATCTTCTCCCGCTGGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005063:ENSGALT00000039907:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(14.9=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(18.7=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATCCGGCTCCTTCCTGA
R:
GCACCTTGTACATCCTGCACT
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]