BtaINT0133007 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046548 | SIAT7B
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (ST6GALNAC4), mRNA. [Source:RefSeq mRNA;Acc:NM_205791]
Coordinates
chr11:98585641-98590078:-
Coord C1 exon
chr11:98589666-98590078
Coord A exon
chr11:98586350-98589665
Coord C2 exon
chr11:98585641-98586349
Length
3316 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TCCCTCTTCCCCACCCACAGGGA
3' ss Score
10.88
Exon sequences
Seq C1 exon
CCTCTGGTCCGAGAGCTGTGCCGCAGCTGCGCCGTGGTGTCCAGCTCAGGCCAGATGCTGGGCTCGGGCCTGGGCGCCGAGATTGACAGCGCTGAGTGCGTACTGCGCATGAACCAGGCGCCCACCGTGGGCTTCGAGGCAGACGTGGGCCAGCGGAGCACCCTGCGGGTCATCTCCCACACGAGCGTGCCTCTGTTGCTGCGAAACTATTCCCACTATTTCCAGCAGGCCCGGGACACACTCTATGTGGTGTGGGGCCAGGGGAAGCACATGGACCGGGCGCTGGGTGGCCGCACCTACCGTGCGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACATTCACCGAGCGCATGATGGCCTACTGTGACCAGGTCTTCCAGGACGAGACGGGCAAGAACCG
Seq A exon
GTGAGCATGAGCCGGGGAGCTGGCCTGCTGGGGATCTCCCTGGCAGCTGGCGGCCTGCCTTCTCCAGGAGCCTCTGGTGCACTAAGGGTCTGCTCTGTCTGGCACTGGGGCTCAGCAGTGATAGAAGCAGGCATGGTCCTGCCCTCTGATGGGGACAGGAATCAGAGAGACTGTCATCATCGAATGACCATATAGATGTTCCACACGGCGGTGAAGGGCGTTCGGCCTCACCAGTATACACTGTGGCGGGGTGGTGGCGGGGGATGGTGGTGGTGGTGACCAGTATGGGGCCATGGCAGGGAGCTCTTCTCTTTGGAGGGGATGTTCTAAGACCTGAATTGGTTTCTGATGTCCCTTCCAGAAAATGAAAGTAACAGTGGCAGTTCTAACAGCCCTTTTTGTGCACCAGGTACTGAGCTAAGTACTCTTGCTTTCAAGATCTCATTTTATCCAACACCCAAGAGAGCACTTGAACTCCTATGGCTTCCTTATCTGCACACTGGTTTCTCCCCCACCTCTCTAGCTCAGAAAATACAGCCACCAGCCTCCAGTTTTTTAGTCAAACACTTGACTTTGCCCTTGACTCCCCTTGTTTCATCACCTGCCACATAGGATGGGCTCTCGAATCTCCTTCCTTGTCCATGGGTACCTCCTTGACCAAAGCCACCATCCTTCTCTGTTTTTTGGTAATATTTTATTTTTTTATTTATTTGACTGTGCCTGGTCTTAGTTGTAGTACACGGGATCTTTGTTGTGGCATGCCAGATCTTTAGTTGTGGCATGCAGACTCTTAGCTGCAGAATGTGGGATCTAGTTTCCTGACCAGGGATCGAACCTGGGCCCTCTGCACTGAGAGCACAGAGTCTGAGCCACTGGACCACAGGGAAGTCCCCACACTCCCCTGCACTTGCAGCACCCCCTGCAGTCTGATCTCTAAGTGCCCCAGTGAGTTCATCCCACCAGTCACCTGGCCTCACCCTACAGCAGCTTTGCATCACGTGGAAAATAAAGTCCAGACTCCCACCTCCTCCCCTGCCCAGGCCTTCGTGCCCTTGCATGGTCTGCCCCTGCCTGCTTCTGTGGCCTCATCGTCCGTCGCTTACCCTGCTCCAGCCGCACTGGCCGTGGACATCCACACTGCTCTCACCTGCAGGCCTTTGCACATGCCGTTCCTCCCCCAGATCCTCCCTTGTGTTCAATACAGATGGAGTTTCTCCTTGGCCCCATCTGAAGGGACACCTCCTACCTGACGTCCTTCATACCATTCTTTTGTTTCCTTGTCTTCTCAGCAGGTCTCTTCCAGCTGCCCACTTCCTTGAGAATGGTAGCGCTGGGTGGGGCCACTTCATGGCCAGCTCAGGGCTTGGGAGGTGTTAGGTTTGAATGGCTGAACCACCCCACAGCCCTTCAGTAGAGCCCAAGATGAATGGCCATCGACTGGGAAAGTAATCAGTACTGGTGCTTTTGGAGAGAGGCGAAGCCAGGTCCGGCTCCAGGGTCCCGTGCTCTGAGTTGGGGGTTGGGGCTTGAGGGAGGAGCTGGGCTGACCGTGTTCCCTTTCTATCACCACCTATAGTTATCCCCCTGTCACCCATAGGTCACTGAGGCTCAGAGAGGTTCATAAGCAAATCGGATGCCCCGGAGCAAATTCAGGGTTCAAGCTGAAGACTGCTTGACTCTAGAAAACCCTCTTCCCCGCTTTCAATGGCTGTGTTTCTGCTGCTTTCTGCTGTCTCTGCAAGCTTGGTCCCTGAGATGTGGAGAGGGTGTGACCAGGGCTGATGCATCATCATTATTGGGGGCGTGGTTTGCTCAAGTTCTGTGTGGATGGGTAGAAGATGCACAGACCTGGGTTGGCACCCGCCCACCTCTTGCCCACTGCTGGCCTTGGGCCGGATCTTCCGGCTCCCCAGTGCTCCCACAGAGCCTCTCTGTGGGGGTTAAGATGAGAAGCCCTTGACTGGGAGGGGAACCAGTGCTGTGTGGTGAGCCTGGGGCCACCTTCCTTCCAAGTTGAGCTGGGGGACGTGGCCAGCTGACTGTGCGTCCCTCCCCCGGCCAGGAGGCAGTCCGGGTCCTTCCTCAGCACCGGCTGGTTCACTATGATTCTCGCCCTGGAGCTGTGTGAGGAGATCGTGGTCTACGGGATGGTCAGCGACAGCTACTGCAGGTCAGGCCAGCCAGGAGCCAGGTGGTTGGGGGGGACACCATGTTCGGGCCCTATGCTGAGGGTGTGTGGGCTTCCGCGTGAGTAGCCAAGGCACAGACAGCCCTTGGGCCTGGTACCCGGTGGGAAGGAGCCCAACCTGTAGAACAGGCTGGGTTTCCCACCTCCACTCTGCCCAAGTGGCCTTGGGCCCAGCCGCCACCTCCCAGGGCAACCATTTTGTTAGGTCAAAGAGAGCAAATGACCACACTGTCCTCAGAAGCTTGTGGAGAGGTTTAGCAAGAGAATGATCTACTGAAGTCCTCGCCCCAGCCTCAGGGCTGCTGTGTGTGTCTGTGATCAGCTGTTACGCCTAAGCTTTGACTTGTGATATTGTTCTAGTTCAACACTGTCATGGCTCCCATCACTGAACTGAAGGGGCCCCGTGTTTTCATCCTCTGTTTTTTTGGGGAACTTCTTTGCTGAGCACGTGGGCAAGATGAAAGTAGCCCCTCTCTACCAGGACGCCTGGCTAGACTGCCTGTGAGTAGGTGGGTATGCAGGCCTGGCAGTTACATGCTGCGGGGACCCAGCGGTCCCTCAACCATGAGCCCGGCACCAGGCACTTTGCAATTTTTGACCTGTGGTTTTAGCTTCCCTGGTGGCTCAGACGGTAAAGCATCTGCCTGCAATGTGGGATGACCCAGGTTTGATCACTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGGCCTGGAAAATTCCATGGATGGAGGAGCCTGGTAGGCTACAGTCCATGCGGTCACAAAGAGTCGGACACGACTGAGCCACTTCACTTTCACTTTCAGCCAAGAAAGTAGATGTCACCATCCCCATTTTACAGATGGGTTATTGAGGCTCAGGGTGTTTGTCTTGGCCTAGAGTCAACCAGCTCGCAAGAGGTACAGCCAGGGCTTGAACCCCTTGGCCTTTAGAATCCTCGGGGGCTGCCCTGTTCTTCCTTTATCTGTCTTGGCCTCCCTTGGGACCTGGCCTGTGGGACTCTGTGGTCCGTAGGGCTGGGGGAGGGATGGTCCTGGCAGGTGGCGGGGTCTGGCGGGAGGCAGACCAGGTGGGCTGCCTCACACCTGTCCCTCTTCCCCACCCACAG
Seq C2 exon
GGAAGAGCATCACCCCTCAGTGCCTTACCACTACTTCGAGAAGGGCCGGCTGGACGAGTGTCAAATGTACCTGGCGCATGAGCGGGCGCCCCGCAGCGCCCACCGCTTCATCACCGAGAAGGCCGTGTTCTCTCGCTGGGCCAAGAAGAGGCCCATCGTCTTTGCCCACCCATCCTGGAGGACGCAGTGGTCCCATCGCCACAGCACCATCACCAGGCCTCTGTTGCAGCCACACTCAGCCAAAAACACTTAATTTATGGATCCTGCCTCCTGCCACATGCCGAGCGGACCTGAGTTCCCTTCCAGCCATACCCTTGGGGACACTTGGAGCCATCTCAGGCTTCTAGACTTGGGGAGAGAGGAGGAGGCCTCTGGTGACCTTTGCAGCCTCCTCCCCACCCCTGCTCCCTGAGTAATCTGAGTCTTCGTTTTTAAGTTCTTCCCACCTCTGAGTCTGTCCAGTGGCCTTCGCCCTGGGGGCTGGTGGCCCCCAGTCACCAGCACTATGAATTTCAACCGAGCACCAGCCCTGGTCCTTCCTCTCTGCACTCCCTCTCCACCTGCCTTTGGTGCCACACTTCCCAGGCTGGTTGCCCTCAGCGGGGCAGCCTAGAGCTTGGGGTTCGTTGGGTGAAGTGGGGGGCCTTTGAACTGTGACTGCCAGGGCCACCTCTGGAGCGTACGGGTAAATGTGTTTTCTGGAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046548:ENSBTAT00000064279:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(87.6=71.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development