GgaINT1026492 @ galGal4
Intron Retention
Gene
ENSGALG00000005063 | ST6GALNAC4
Description
alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase precursor [Source:RefSeq peptide;Acc:NP_989842]
Coordinates
chr17:4870911-4871635:+
Coord C1 exon
chr17:4870911-4871018
Coord A exon
chr17:4871019-4871089
Coord C2 exon
chr17:4871090-4871635
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCCCCGCGGTGCCCACAGGGA
3' ss Score
7.33
Exon sequences
Seq C1 exon
GGTGAAATCCGGCTCCTTCCTGAGCACAGGGTGGTTCACCATGATCCTGGCCATGGAGCTGTGCGAGCACATCTGCGTCTTCGGCATGGTCAGCGACAGCTACTGCAG
Seq A exon
GTGAGGGGCTGGGGGTGGCAGCGGGGGCTGCGGGGGGGCGCAACCCTGCTCAGCCCCCGCGGTGCCCACAG
Seq C2 exon
GGAGAAGAACCACTCGAGCGTGCCTTACCACTACTTCGAGAAGGGGCGGCTGGATGAGTGCAGGATGTACCTGGTGCACGAGAGGGCCCCCCGCGCCGGGCACCGCTTCATCACCGAAAAAGCCATCTTCTCCCGCTGGGCCAAGAGGAAGGACATCATCTTCAGCCACCCGTCGTGGGCAGGGGGGTAGGAGAGTGCGGCAGTGCGGTTGGAAGCCCCTCGATATGCCCGGTATTGGGGGTCTGCAGCCACTGGGGGGGCAGCAGTGGAGACCCCGTTGCGTTGGAGCGCATAGGGCAGGACTGGATCCACCGAGCCCCCCCAGCTGCAGGCCCCGAGCTGGCTTGGACCCGTGCAGTGTGGATGTTTAATGTGGGATTCATCCCGGGACGGACCCCACGTATATGGGGCACGTGGAGCGGGGCCGGGACCCCCTGTCCCACAGCCCCCGTGTGCCCCCTGCCCGCAGCCCTGAGCTGCCTTGCCACAAGTGCCCTTGGATTCAGACCAAAGCCGACTTGCCCATTAAAAGCATTTGTAAGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005063:ENSGALT00000008118:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(14.2=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(22.5=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAATCCGGCTCCTTCCTG
R:
GTACATCCTGCACTCATCCAGC
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]