GgaINT0124811 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6921784-6922608:+
Coord C1 exon
chr17:6921784-6921988
Coord A exon
chr17:6921989-6922295
Coord C2 exon
chr17:6922296-6922608
Length
307 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCA
5' ss Score
6.35
3' ss Seq
ATGGATTTCTTCCTCTGCAGTGT
3' ss Score
7.48
Exon sequences
Seq C1 exon
ATGGAAGGTAACCCCGGGTGGCCCCTGTTCCTCCAGCTGTGGGCTTGGCTTATCTGTTCAGCTGGTCACCTGTGTGCAGATTCAGCAAGGCAAAGAGATTTTGCTGGAGCAGCATTCATGTCCTGTGTCAGAGAAGCCCCTTACTACCATTCCCTGTGTCATCCGAATGTGTTCTTATGAATGGAGCTTCAGTGAATGGACAGAG
Seq A exon
GTATCACGTTTTCCCAGCTGTGTAATAATGACCTTGGGCATGTTTTCTTCTCAAATGCAGATCTTGGATTTTTTTGGGGTTCTGCAGTTCAAAGATATAGTTTACAGTGTTCCTCGGGAGGTGGGCCAGCTTCGTTATTTCCATCTTACAGGTGATGAAACTAAAGAACTGAAAAGTCAGGTGGTAGAACAGCATCAGTGAACAAAAGATCAGAATTCTGGATCACGCTTGAGCAAGTCAGTGTTATTTATTTCTGAATACCAGCTGAAACGCATGCATAAAGACCTATGGATTTCTTCCTCTGCAG
Seq C2 exon
TGTTCAACTTCATGTGGGAATGGTGTTCAGACACGGCACAATTTCTGCCTCAACCGGCTCACTCATAAGCACGTGAACCCCATCTTCTGCAGGCGCTTCCCCAAGGCCATTGTGCTGCGTGGCTGCTCTGCAGGGCCCTGTCCTGAGCAGGGGGTGGACTCCAGGTTGCATGGAGCAGAACTGCAGACAGTGACACCAGCCATGCATCTGATGACTACTGCAGATGCTGAAGGGCCAAGATACAAAGGCCTGATTCTTCCTTCATCTGCTCTGCCAGCTGTCCTTCAGGAACAGATAAAAGAGACCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(18.4=10.1)
A:
NA
C2:
PF0009014=TSP_1=PD(76.3=27.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGATTCAGCAAGGCAA
R:
CATCAGATGCATGGCTGGTGT
Band lengths:
346-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]