GgaINT0124874 @ galGal4
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7061580-7063766:-
Coord C1 exon
chr17:7063698-7063766
Coord A exon
chr17:7061667-7063697
Coord C2 exon
chr17:7061580-7061666
Length
2031 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ACGCTCACTTTTCTTTTAAGGAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GAGCTGCTCAGCCACTCGTCAGACCGGCCCGAGAAGCAGCAGCTGAAGGAGGCTCTGGAAGCAATGCAG
Seq A exon
GTACAGCAGACCCGTGGGTGGACAGACAGCCCAGCATCCTGGGGAAGGCAGCTCTCCGTTAGGGCACGTGTGTGTGGATGTGTGGGTTGCTGTTCGATGGGATACACCCCCTGGTGCACTCCAAGCTCACAGCAGGATCATCGTCAGCAGAATTTGGTCGGAAGATGCCCATTAAATCCAGGTTTTCTCTCTCGAGAGCATTGCAGGGTTCATCCCTGGCCTCGCTTGTTTGCTCTGAGGTCACTTTGTTTTCTACCTCTTGAGCCTCAGCTTTTTAATGACACTGCATTTCCTACAGTTACGTAACTTTGGTGACCTTTTTAGCCAATCCAAGCCCATATGTAGGTCGTTCTAGTTAGGACTGAAGGACACTGCATTCCCATTCCACTGCTGAACAGTACAGCCTCAAACAACCATGCTGGGAGTGGGAGAAGGGATTCCCTCTGGTGCCACAAACCCCCCCCCCCCCCCGAAAATGTCCTTCCTGGCTGATGAGACAAAGCAGCAGACCTGGTGACAGCTGCGAAACCCTGCTTATGGCCTCGTAATGCAGCACCCACTGCTGCTGCTGCTCATAAATAAATGGATGCAGCCTCTGCTGCAGAGTCAGCATTTTTGGGAGGAAGCTGCCAATAGCCATCAGAGAGGTTTGTTTGCTTTCCTTGCCCCATCACAAAGTGCTGGGCTAGCCAGGGGGCATAGGAAGCAGAGCAGTTTGATTTTAATTGATTTGTAAACCAGGACTTAACTTACAAGTAGTGCTCTCCATCAAGATTCCAGCCTTTCTGTCTCCTTTGCTGGCAGACATCGGTGCCCTGTGGGGTGAGCTGTGCAGGGGGTGGGTAACCACAACTGGAGCTGCCCTTCTCAAAGGGCTTCACTCCCTTTCACTTTGCATATGTCACCACTAGCACAGGGCAGGGGCAGGAGTTGCACCCAGAGGCCGCGCGTGGTGCTTGCGTCGTCCCTACACCTGAGCACACAGGGCTGAACCCCAGGGGATGGGGACAGCCCTACAGCCTGCACGCTGCTGCTTCAGGTCACCAGCAGTCCTGGAATTGGGTTCCCTTTTGCACACGCGACGGTCTGCTGAGCAGGAGGGAACACCCGAGCACTGATGGAGGATGCCGACCTCCTTCCGTGAGGCTTCCACTTCTGTCGCTCTTCATAACCATCCCTGGCCTGGGTGTTTTGTGATGTTATAAGTATTGTCATTTCAATCAGTGATTATCGTCTGTGATTAACCCTTCCTGCGTTGGGAAGCTGGGGAAGGTCTCGCCTGGAGGGGGTGTCGTAAAAAATTCTGCTCTCAGATTTAATCCGTGCTGACAAGGAGCTCTCGTTGAGGACGAGGAGGCAGGGAGATAAGAAAACAGGGAGATGTGGTCGGAAGGACGTAAGAAGTTGTAGTTGAAGGGCTCTTTCTCTTTGGGTCGACATTTGGGCAAGCAGAGGATTTCTTTCAGAGAAGAGCAAGCACCACAGAGTGTCTCCTTATTTTACAAAATCATCTTTGTGTGGTTGGAAATCCTCTTATAGTGCAGAGGTTTTGATGATGAAGAGTGGCTCAGAGCTCTTTCCCCGGGGGGATGGAGGGAATTAGGGTGACAGAGCTGAGGTGCTTGCTGCTGGGGCTCACAGCAGATACGTGCCATGCGTTGGGTTACTGGGTTCGTGCATTGCCCTCTTCTGGGAAATGGGAGAAACTGCAGCAGAAATGTTCCTGCAGTGCCAGCACGGCGCACCCCGAGGCGCTGGGATGCAGCCCAGAGGCGCAGGCAACCTCGATGGGTGCCAACATGGGCTCCTTTGCTTCACTTATAGTCCCTGGGCTTGTAATACAGCAGAAGTCTGTTGGGCTGCTTTTCTTCTGGAGGTGTCTGTGGGTGCAGCATCCTGTGCTGTGTGGGTTCCTGCAGAGCTGCTCCCAAACGCACGCGAGGAGAAGGAGTGGGATCACAGCCCGGCTGCTGTATGGAAGGTGTTGGTTCTATTGGGAAAATAAAAACCAACGCTCACTTTTCTTTTAAG
Seq C2 exon
GACTTGGCCATGTACATAAACGAGGTAAAGAGAGACAAAGAGACGTTGAAAAAGATCAGCGAATTTCAGAGCTCTATAGAAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(4.0=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]