GgaINT0125021 @ galGal4
Intron Retention
Gene
ENSGALG00000008681 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr17:1734095-1738504:+
Coord C1 exon
chr17:1734095-1734574
Coord A exon
chr17:1734575-1738428
Coord C2 exon
chr17:1738429-1738504
Length
3854 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTGTTCTCTCTCTTCTAGATG
3' ss Score
13.64
Exon sequences
Seq C1 exon
ATCACCTGTTAGCAGACTCCTACATCGGGCAGGAGGACTCCCCCGAGATGCAGCAGGCAGCACAGAACAAGCGCAGGCTCTCTGTCATCTCCGATGGCAAGTTTGAGAGGAGCTTCTCTGAGGAGCAGACAGAGAAGATGCCAAGCGAAGGACCGAAGCCACGAGTCTACACGATCTCTGGCGAGAGGCCGATGCTGTCAGACCACGAGAACGAAAGTATGGAACTGGTGGTGATGAAAGGGGCTGCCCAAGAGGAATGTCACCACGGCCACCCCGTGCACGGTGCTGGTGGCTCTCACGGTGTCAGCAGGCATTGCAAGGGCTGGCCTGGAAGCCGGCAGGGATCCAAGGAGTGCCCAAACTGCACCCGGCTGGCTGCTCCTTCCCATCATTCCTTTGACCTTGAGCCACATCAATCCGGCGAGACTGGATGGCACAGAAAAAGGCTGGAAAGGATGTACAGTGTCGATCGAGTGTCTG
Seq A exon
GTAAGTAAGAGCAAGTGCTGGGTGCTGGAAGGGCACAAAGGGACTCTTCAGCATGGGTGAAGGGTGGCACCTGTCACTTTCTAGCATGGAGGTGTCATTGCCATGTACCTTGAGTTGGGCCCTATAGCGCTTCACCTTGCACCAGTGTCCACATAAAAGGAATCCCTAAGCAGGGCTTTTACAGTATGAGGAGCTCATTTTACAGTAAGAGGTCACCTCATCCAAACCCATTGTCTCTGCTCATCAGCAACACGTGAACTGAGTGGTTCTCATGATGGCTTGGTGCACCTTAGGGGCTCTACTTGGGTTCTCTTTCTGTTGAAGAAAGGGCAGGAGAAGAGGGGCTGTGTTGAAGGACCTACATTTTTGCTCATCCAGGAGGCCGTTCAGAGTAGGACTCTCCTTCCCCTCACTTGGGGGCTGAGGCAGGTGAAGTCTTTCTTGAACATGCCAGAGTGCTCAGAGAGAGCCTCAGCTCAGGTTGAGTGCTCCTTAGTGTGTTGCATCCCCAGAGTGCTGGTCTGTGTGGCTGGCAGTAGTCTAGCAAGGACCCGCACATAGTGCCACCTCATAGTCGTGCCATAAATATTAGCAAATAACACAACACTGGACTTTCTCCCACACTCACTATCCAATTGCTGAGTGCTTTCAGGGAATTTGGCTTGTAATGTTTTAATTGCATAAAACCATTCCTGATCGTGTTTAAAAACTTAACGATTAATTAAATATTTCTCCCAATCTATATGCTTTAAATTATAACCTAAAACAGTCCATCTTTGTCTGTCAGTGCTGTATGTGGCTGGCAAAGAGTCTGACCTAATTTGTTTAATTCTTTTTATTATATTTTCTTATGGAAAGACTCATCAAGGCTTTTAGAGATGAGTGTCCAGCCAGGAAATGTCAAGGTTTTCCCCTTGAAAAGAAATTTGGTAAAGTATAAGGTCTGTGCAGATCACACTGTATCTCTTTCCTCGACTCACAGTGATACTGCAGGTAAGACTGCAGGTAGTTTGAATTCTGGACCATATTTTCATACTTGCATGCTTGCAATTACGTGACTAAATTCATGTATTGCCTAATCCTAAAGAAGGGGAAAAAAAAGACTTATCAAATGTGCAGAACACCTGCAGTCCAGCTAACTTCTGTGCATCACTTTATCTATTGTTTTTCTGTTTGTTCCCTGTGAATTTTTGGGCTTCACCTTCAGTACTGCATGTACAATTTAGACCTTCTTATTTTTATTGCTTAAGTGAGAAAAAGAGTTTTCCCTGTATTTACTGCTCTACGATCACATGCATTTTACTGGTAGAAAGCTGGCTCTGCATGTGAAGACACAGTCAGGAATCTAGATTGAAAGCAGAAAAAGCCATGTCAGTCTGAGCCGTTCAGAGCAGAGATCACAACCCAGGGGGTTTGCTCTTGTTGAGCTCAGGGTGCTATGGGGAATGAGCTGCAGACTCATAACATGTTCTGAATTAAGAAGGTGAATATTTCTTGTTCTAACATCGATGGGTTTATGTTGAAAGCTTTCCTGAACAAATCAGAACTGTATTTTTTGCTGCGGGACTGAAGCAGGTCGCTTGATGCAGAACCAAAGGAAGGCTCCATGTTGCTCATGGAGGAGTTTGAACTCCAAGAGCTGAAGCTGAACTTCTCTGTTTGCTGGAAAAAAAAACACAATCTAGCAAATGCCAGGCCGTGTTTCTGAGTCTTGGGCTTAGAATATGTTTCCAACCAGGCAGCAATTTTCATTAGGGTTGGTTATTAATGTGAAAGGGAGATTGCCTTTCTAAAAGTAAGCGTACACTGGACTAGCTTCTTAAATGGAAACAAAGTGGATGGTGCTGAACCTGCCAGGTGCCTTTATGAGTATTTCACTTTGTACATGCAGGCACAGCCACCCCCTGGGCTTGCTGCAGCTTTCGAGTGCTCACACGAGTGGCAGCACTGTGCCTGAGACCAAATCTCCCCATAGCACTGCACCACAGACTGCAGGTTTTCTCAGCTCGGTGTCATTTACTCTGTCTATCCATGCATTGTTACTCAGGAAAAACAAACGACAACTGAGTGGCACAAGCACAGCAGGTTGCAGGAGGTATTTCCTGGAATGTCCTTCATGCATGGCTAGCAAAGAAAGCAGAGCAGAGGTGAATGGAGCTGAGAGAGAGACTAATTTCCCCAGAAATTCATTTGACAGTGCTGCTTTTTCTGTTTGGATTTACGTGAGGTGTCACTCGTGGCAGTTAGGCCAGATTGGCTTAATTTAATATGGAACTTGATGCTGAGTTTATGATGCCTAGCACCATTCCTCAGAAGCTCTGCTTTGAATCAAAGCTAGTGGCTTAAGAGCTATGACATGTAATAAGAGATCATCAGTCCTTTGGGATGAGCAGTTCCTGAGAACTCTGTGCAGAACTGTTGGCTAAACCAGAATTTAGACAACTTCACCTCCTCCACCACTTCAGTGGGTTCGAGACGTAGAGCAAATAAATCATTTATGTTCTGAGCCATTCTACACTGCTTATCTATGTTTTTTTTGGAGGAGAGCAGGCTGAGGAATTTCATCAGAAGTATTTAATGTTCTTGAATGCTGACTTAATTTAAAACATTTATTTCCTTAGGGTGCCTTTATACAAACCTCAACATAAACTGTCTGCTGAGGAGGAGTGTCTGTTACAGCATTCTGTGTAATTCCTAAGGAGTCCCACTTCAAAGAAAGTCTCCCCACTTGCATCTAGCTTTTTGTTTGTTTTTTCCCCATCTGTAATTACAGCTGCTTTTTGTGGATTTGATTGGATTTTGGCCATTGATAGTGCATAAAATACTCTTGATAATGCCAGAATGCTAATGACTAAGGTGCTGTGGTTCATAATGATCTTAAAGCTGGAGGGTGTGCGTCTGGACACACGGTTAGCAATACATGGCAAGGTGTTAAGCAAGGAATCCTCAAATTCAGAGTGAAGCAAGATGAAGAGTCAGGTAACCCCAAAGCCTGGGGATCCCATCCTGTGGGATCTCACACATCTGGTGGCAGTGGATTTTAATACACCTCCAATTTCTGCCTGAGCAAATTCAGCCTGAGAGTTCTCAATAGTTGCTGCTTCTCAGCCAAGTTCCTCCTTCTGTGTCACCACGGTCCCACAAACATAATTGGTGACTTGTTTTGCTGCCTGGTTTTTGTCTTGGTGGCCATTACATGAAGATGATGTGATGTCCTAATATAGCAGAATTGGGAAATAATCTGCAGTTGGTTTAGGGAGGCCAGTCTGCAGACACAGGGGACCAAATAAATGTGGTTATCACCAGATTGCACAATCCGTGTGCTGTTTGATTTCCAAACCCAGACAAACTCATCAGACCAGGTCATCAGGAGCAGGTGTATGAGATGTGTACAGGAAAACGTCAGTGGGAGAAAAAGAAAGCATATTTCTGCCTTACAGCTCTGAATAGAGGAAGGTGAGTACTGTATCAAAAAGAGCTGGATGAATGGGGCATTTCAAGCTAATGGTACTGAGGAAAAGGCAGAGACTGGAAAACGCTTTGAATGAGAAACATTCCCCCCCCGCCCCCCCTTTTTTTTCTCTTGTTCAAATGTCTCTTATGTAATTCCTGGATTATTCTAGTCTTTGCACTTAGGAGAGAGCTTTCATTCTTCATTAGCTGTGTGACAGACAGGCTTAGTACAATTTACAAAACACTTGGTGGTAGCATGCATATAAAGTGAGAGGATGAGACTGTCTTACTTAATACAGGGCAGGGTGCTGAAGAAAAGTGTTAAGTGAGAGCTGGGAAGTCTTGCTGTCGAATTGTGCCTCTGCCTGCTGGATTCTCAGCTTTTGTTCTCTCTCTTCTAG
Seq C2 exon
ATGATGTCCCCATACGAACCTGGTTCCCAAAAGAGAACCTCTTCAGTTTTCAAACTGCTACTACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681:ENSGALT00000014129:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061222=IQ=PU(42.1=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]