HsaINT0112664 @ hg38
Intron Retention
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137456411-137457537:-
Coord C1 exon
chr9:137457407-137457537
Coord A exon
chr9:137456487-137457406
Coord C2 exon
chr9:137456411-137456486
Length
920 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTCCTTTTTGTCTCTCTTAGACG
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTGCCCCGGATGTGCCCAGCTGGCTCCTGGCCCCACCCCTCGGGCCTTTGGGCTGGACCAGCCACCTCTGCCTGAGACCTCCGGTCGCCGCAAGAAGCTGGAGAGGATGTACAGCGTTGACCGTGTGTCTG
Seq A exon
GTGAGGGGTTTGTGTCAGGGCATAGACAGGTTTGGGGGTGCATGCCGCTGCCAGGGTCTGACAGCAGCAGCCACTGTGAGGCTTGGAACAGAGAACAGGTGCTCAGGTCACAGCATGCCAGCGGACTCAAGATTAAAACCGGCAGGCTTCTGCTGCGGCCTCCACACCCTATGAGCTGTGAGCTCCCTCAGCTCCTCAGCAAAATCTGCCAGGCCTCACAGTCCGCTTTCGCCCTGCTAGCACCAGGTCAATCAAGGAGTGCTTCCTGGAGGAGGGGGCCTGGGAGGATCTTAAGGGATATGTAGGGAGGAAGCACCGCTTAATCAGGAGACTGGGCTGCCCTCCGAGAGTCCTGGGGAGCTGTTGGGGCCCAGCCAGGCAGTGGGCATCTTTCCCCAGGGTTGTTGAGTTGTGTGGTAGCTTGTCCACCAGGCAGAAAGTCACTCCACTGTCCCCACACTTGGGCATCAGGGAAAGGCTGTGGGGGCCCTCGGAAGGGGACAGCCCTCAGCAAGGTGGTCTCTAGCCTCGGTGAGGGCCTCCAGCTAGAGCATGGGGGCTGCAGAGAAGGCCTCAGAGCCTCTTCTGCCCAAGGGAAACAGACGCATTGTTTTCCTGGGCCTCCTGGAGACAGACTGTGCTTTCAAAGGAATGTTTCTCAAACTTTGGGTGGCCAAAGGGAAAGTTAAGCCAAAAAAATCAAAGCGTCAAGTTACCAAGAGCGTGGTCTTGGTGAGTGAGCAGCAGACATTCGAGCACTGCCCTCTGTGCCCGTGTGGGGATGCCACCCTCCCCCCACCCGCCCTGGCTGCCAGCTTCTGCTGACCCCTGGACCCAGAAGCATCTGCTTCCCAACAGGGAGGGAGAGGCTTCAGGAACCCCTACTTCACCCAGCCACCGCTCCTTTTTGTCTCTCTTAG
Seq C2 exon
ACGACATCCCTATTCGTACCTGGTTCCCCAAGGAAAATCTTTTCAGCTTCCAGACAGCAACCACAACTATGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802:ENST00000339554:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development