GgaINT0125113 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1306034-1306921:+
Coord C1 exon
chr17:1306034-1306203
Coord A exon
chr17:1306204-1306815
Coord C2 exon
chr17:1306816-1306921
Length
612 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
ACGTTAATGAACCCTTACAGCTA
3' ss Score
5.44
Exon sequences
Seq C1 exon
AGCCCACTCACCCACAGAGAAGCTTCATCCAGCACAGACAGACCAGCTGTGCTGCGAGTGCGTTGTGAGTGCACGGTGGTGGTGAGGGCAGGCGAGGTGCCCTCCGTGCCGGCGCTGCGGGCACTGCTCCGGGAGCGCTTTGGCCAGCAGGCAGAGCGTGGGAGGCTGAG
Seq A exon
GTACGGCGTCCTCCAGCACTCACTGTGCATGCTGTCCTTGCAGTGTTTGGCAGCAGTGATTTCCCTGAGGACACAGGCGTCTATCTGACCGTGTCTGGTCTCCAGCACCAAAGCAGTCTAGCATTTGGGGAACAGAATGTGATCCACAGGCTTTGGAGACTGGAGGAGCTTTCCAAGGAAACTGCCATTGTCAAGAAAAAAAGAAACAGAAGGAAAAACTTCGTACAGATGCAGCTGCTGTATATTGAATTTTCTTCTGCCCAGCCTTAAAGACACACTGGGATCAATGCAGAGCGATCTAGGAATTCAGTGTGAGCTAGTCCTGGGGTGGGTATCCCTGACCGTGACATCCCTGGGGACTCTCAGTTGGTGCAGACATGAGAGATTTGGACCTACCCCTCAAGTAGGAGTCTTAGGAGGCAAGACCCTCCCCAACAGTGCCATTTGTGCCCATTCAGCATGCAGGGTGACCCCTTGTCATTGCACAAGGTGACAAGCTTGGAGCTGGTTTACAAAGAGAGCTTTGCGGACTGAAGATTGTAGAAGGCTAGAATTGCCTAAATGTTTGTCTTTAGATCATATGATTTGAGTCACGTTAATGAACCCTTACAG
Seq C2 exon
CTACAGGCATTTGGATGGCAAAGAACTAGGTGCAGTTTCGGGAGAGGAAGATCTAGAGAAGATGTGGCAGCAGCTGACAGATGGCAGGATCACACTCTGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0056419=PB1=PU(50.0=66.7)
A:
NA
C2:
PF0056419=PB1=FE(46.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCACCCACAGAGAAGCT
R:
CTGGCAGCAGAGTGTGATCCT
Band lengths:
273-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]