GgaEX0013114 @ galGal3
Exon Skipping
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1305036-1306921:+
Coord C1 exon
chr17:1305036-1305094
Coord A exon
chr17:1306034-1306203
Coord C2 exon
chr17:1306816-1306921
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTTGCGACATCTCTCTGCAGAGC
3' ss Score
6.83
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATTCTCCTGGGGAAGAAAATGTTTCTGCAAATGATTCTGGATCCCAAGTGGATTTTGAG
Seq A exon
AGCCCACTCACCCACAGAGAAGCTTCATCCAGCACAGACAGACCAGCTGTGCTGCGAGTGCGTTGTGAGTGCACGGTGGTGGTGAGGGCAGGCGAGGTGCCCTCCGTGCCGGCGCTGCGGGCACTGCTCCGGGAGCGCTTTGGCCAGCAGGCAGAGCGTGGGAGGCTGAG
Seq C2 exon
CTACAGGCATTTGGATGGCAAAGAACTAGGTGCAGTTTCGGGAGAGGAAGATCTAGAGAAGATGTGGCAGCAGCTGACAGATGGCAGGATCACACTCTGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.211 C2=0.028
Domain overlap (PFAM):
C1:
NA
A:
PF0056419=PB1=PU(50.0=66.7)
C2:
PF0056419=PB1=FE(46.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGGGGAAGAAAATGTTTC
R:
CTGGCAGCAGAGTGTGATCCT
Band lengths:
163-333
Functional annotations
There are 0 annotated functions for this event