RnoEX6015794 @ rn6
Exon Skipping
Gene
ENSRNOG00000009286 | Noxa1
Description
NADPH oxidase activator 1 [Source:RGD Symbol;Acc:1306687]
Coordinates
chr3:2300190-2301030:-
Coord C1 exon
chr3:2300942-2301030
Coord A exon
chr3:2300623-2300777
Coord C2 exon
chr3:2300190-2300304
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGCCCGGTTTCTGTCCTCAGGGA
3' ss Score
9.53
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGGTCACATGAGCCCTGGCCTATGGGACAGTTTGCTGGCAACTGGAGGGCCTGTCCCGGGCCCCTCTGAAGATTCCTCTAGTGCTGAG
Seq A exon
GGAACAGCTACAAAGGACCCTGAATCCTTGGTGACTGTCACTGTGCAGTGCCACTTTACTGTGCCCCTGAAGGTCCCCAGAGGAACTGACCTGTCCAGTTTTCGGACACTACTGTCTCAAGCTCTCCTTCAGCAGACCCAGAAGGGGCAGTTCAG
Seq C2 exon
CTACAAAGCCCGAGGAGAGGACAGAGCCTGGGTCCCCATCTCCACGGAGGACTCACTGCAGAGTGTATGGAGGAATGTGCCAGTGAGCCCAAGAGGCTTGCAGCTCCAGTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009286-'11-13,'11-9,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056419=PB1=PU(49.4=76.9)
C2:
PF0056419=PB1=FE(46.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCACATGAGCCCTGG
R:
CGGCACTGGAGCTGCAAG
Band lengths:
203-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]