HsaEX0043447 @ hg19
Exon Skipping
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:10668]
Coordinates
chr9:140325688-140328316:+
Coord C1 exon
chr9:140325688-140325793
Coord A exon
chr9:140327905-140328059
Coord C2 exon
chr9:140328202-140328316
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCTGCCTGGACCCAGGGA
3' ss Score
6.92
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTCCCTAATCATGGACTCCCCAAGAGCTGGCACCCACCAGGGCCCCCTCGATGCAGAGACAGAGGTCGGTGCTGACCGCTGCACGTCGACTGCCTACCAGGAGCAG
Seq A exon
GGAGCAGGTGCAGGGGGCTCCGAGCCCCTGGTGACTGTCACCGTGCAGTGCGCCTTCACAGTGGCCCTGAGGGCACGAAGAGGAGCCGACCTGTCCAGCCTGCGGGCACTGCTGGGCCAAGCCCTCCCTCACCAGGCCCAGCTTGGGCAACTCAG
Seq C2 exon
TTACCTAGCCCCAGGTGAGGACGGGCACTGGGTCCCCATCCCCGAGGAGGAGTCGCTGCAGAGGGCCTGGCAGGACGCAGCTGCCTGCCCCAGGGGGCTGCAGCTGCAGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.173 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF0056419=PB1=PU(49.4=76.9)
C2:
PF0056419=PB1=FE(46.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTAATCATGGACTCCCC
R:
GTCCTGCCAGGCCCTCTG
Band lengths:
182-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)