BtaEX0024745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105702993-105703722:-
Coord C1 exon
chr11:105703614-105703722
Coord A exon
chr11:105703268-105703422
Coord C2 exon
chr11:105702993-105703104
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACCGTTCTGCCTGCACCCAGGGA
3' ss Score
9.15
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGGACAGCAGTCACCTGACTCCCTGGCTGCCCCCTCCTTTCTCCCTGCAGGGCTGCTGGCAGCCGGGGGGCCCAGCCCTGGCTCCTCCTCCGAGGCCGCCAGCACAGGG
Seq A exon
GGAGCGGCTCCGGGGCGCTCTGAGTCCTTGGCGACCGTCACCGTGCAGTGTGCCCTCACCCTGAGCCTGACGGCCCCGAGAGGAGCTGACCTGTCCAGTCTGCGGGCCCTGATGAGCCAGGCCCTGCCCCCCCACGCCCAGCGTGCCCAGCTCAG
Seq C2 exon
TTACCAAGACCCCAGCGAGGATGGGCGCTGGGTGCCCCTCTCTGGGGAGGAGGCACTGCAGAGAGCCTGGCGGGACGCGGCCGGCCCTGGGGGTCTGCAGCTGCAGTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.462 C2=0.553
Domain overlap (PFAM):
C1:
NO
A:
PF0056419=PB1=PU(49.4=75.0)
C2:
PF0056419=PB1=FE(46.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGCAGTCACCTGAC
R:
CAGCTGCAGACCCCCAGG
Band lengths:
212-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development