BtaINT0103037 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105703268-105703722:-
Coord C1 exon
chr11:105703614-105703722
Coord A exon
chr11:105703423-105703613
Coord C2 exon
chr11:105703268-105703422
Length
191 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
ACCGTTCTGCCTGCACCCAGGGA
3' ss Score
9.15
Exon sequences
Seq C1 exon
GGGACAGCAGTCACCTGACTCCCTGGCTGCCCCCTCCTTTCTCCCTGCAGGGCTGCTGGCAGCCGGGGGGCCCAGCCCTGGCTCCTCCTCCGAGGCCGCCAGCACAGGG
Seq A exon
GTAAGAGCCAGCAGCTCTCACGTCACCCTCACTCCCCGAGGCCAGGCCCCTCTCCTATCCAGCCGAGGAAGCCTCCCAAGTCGTGGCCCCGCCCTGCCACCTCTCCGCCCCTGCCCTGCCCCCTGGGCTGGAAGCCCACCCCAGCCGGACCTGGGGCCTTGGGGCCCAGACACCGTTCTGCCTGCACCCAG
Seq C2 exon
GGAGCGGCTCCGGGGCGCTCTGAGTCCTTGGCGACCGTCACCGTGCAGTGTGCCCTCACCCTGAGCCTGACGGCCCCGAGAGGAGCTGACCTGTCCAGTCTGCGGGCCCTGATGAGCCAGGCCCTGCCCCCCCACGCCCAGCGTGCCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056419=PB1=PU(49.4=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGCAGTCACCTGAC
R:
GCAGGGCCTGGCTCATCA
Band lengths:
236-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development