HsaINT0115004 @ hg19
Intron Retention
Gene
ENSG00000188747 | NOXA1
Description
NADPH oxidase activator 1 [Source:HGNC Symbol;Acc:10668]
Coordinates
chr9:140327657-140328059:+
Coord C1 exon
chr9:140327657-140327715
Coord A exon
chr9:140327716-140327904
Coord C2 exon
chr9:140327905-140328059
Length
189 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CCCCTCCTGCCTGGACCCAGGGA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GGCTGCCGGCAATGGGGGGGCCTGGCCCCGGCCCCTGTGAGGACCCCGCGGGTGCTGGG
Seq A exon
GTAAGAGGCTCTAGACCCTTCACCTGTCAGTCACCTGAGGGAGGCTGAGGCCAAGCCCCATCCCTCAGAATCAAGGCTTGCAAGCCCCCCTCACCTGCCCAGTCTCTGTCCACACCCCTCGGGCTGAAGACGGCCCTGACCAGGCCCTGGGCCTCAGCGACCACCCCTCCCCCTCCTGCCTGGACCCAG
Seq C2 exon
GGAGCAGGTGCAGGGGGCTCCGAGCCCCTGGTGACTGTCACCGTGCAGTGCGCCTTCACAGTGGCCCTGAGGGCACGAAGAGGAGCCGACCTGTCCAGCCTGCGGGCACTGCTGGGCCAAGCCCTCCCTCACCAGGCCCAGCTTGGGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188747-NOXA1:NM_006647:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056419=PB1=PU(49.4=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)