MmuEX6099413 @ mm9
Exon Skipping
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:24941706-24942547:-
Coord C1 exon
chr2:24942459-24942547
Coord A exon
chr2:24942140-24942294
Coord C2 exon
chr2:24941706-24941820
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGTTTTTGTCCTCAGGGA
3' ss Score
10.69
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGGTCACACGAGCCCTGGCCTATATGATAGTTTGCTGGCATCCAGAAGGCCTGGTCCAGGCCCCTCTGAAGTTTCCTCAGGATCTGAG
Seq A exon
GGAGCAGCTACAAAGGACCCTGAATCCTTGGTGACTGTCACTGTGCAGTGCCACTTTACTGTGCCCCTGAAGGTCCCAAGAGGAACTGGCCTGTCCAGTTTTCAGACACTACTAGCTCAAGCCCTCCTTCACCAGACGCAGACAGGGCAGCTCAG
Seq C2 exon
TTACAAAGCCCCAGGAGAGGAGAGATCCTGGATTCCCATCTCCACGGAGGAGTCCCTGCAGAGTATATGGAGGAATGTGCCCGTGGGCCCAGGAGGGTTGCAGCTCCAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.212 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0056419=PB1=PU(49.4=76.9)
C2:
PF0056419=PB1=FE(46.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACACGAGCCCTGG
R:
CTGGCACTGGAGCTGCAAC
Band lengths:
203-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: