GgaINT0125120 @ galGal3
Intron Retention
Gene
ENSGALG00000009090 | UAP1L1
Description
NA
Coordinates
chr17:738897-740180:-
Coord C1 exon
chr17:739984-740180
Coord A exon
chr17:739038-739983
Coord C2 exon
chr17:738897-739037
Length
946 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GTTTGTCCTCCTTTTTGCAGAAA
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTGGTGGAGAAGGCCTACCCCACAGAGCCTATTGGGGTGGTGTGCCGTGTGGATGGGGTCTCTCATGTGGTGGTGGAGTACAGTGAGATCAGCCCAGAGACTGCGCAGCAGCGAAGACCTGATGGGGGGCTGATGTACAGCGTTGGCAATATCTGCAACCATTTCTTCACTGTTGAGTTTCTGCAGACAGTGGCCCA
Seq A exon
GTAAGTTCCAGCAGAACTGCCAGGCAGCTGTGCACAGTGGATGTTCCCATTTCCCGTGTTGTAGTTACGGATACTTCGTACTCTGCTCTTCACCTCCTCTCTCCTCCAGAAAGTCCCAAACAGCTGTGTCTGCTGCTGGTCACCCCGGCATGCTCTTTATGCCTTATCCAACAGAGAGTTTGCGTGCTGTGCTGTAGCTCAATCACCTGGGATAAACCAGTGCTTTGACCTTCCTGGGCCTGCAGGGATGAGCAGCCACATGGGCTGCATCACTGACCACACCACTCACTTTGAGGATTTTCGATTGTCAGCCATGCTGTATCCCTTTGGACAATTGGATGGGGGTGTGGGTGAGGCTGGCAGAGGACTGGACCTTGGAATTGGGAAACAGGAATGTGATACTGGGCATTCACTGAGCAGCTTTCTTCCCTTAGTTTTGGTTCTGACCCTGGACTGGAGGTACTCTTTTCTTGTGGGGTTTGTTGCTGTGCGAAGATAAGAAACTGATGTAGTCTAAAGGTGTGGGGACAGTTAAAGGAGACCTAATTTCATTTCTGTCTAGTGCTGAGGCAGACGGTATTCCAGAAGAGCTTGATCTGTTTGTGTGAAGGATCTGCTCTGCTCCACTTTCGTCCTGGTCAAATAACAATTCGGGTTACCTTTTTTCCCTCTGCCTGTGATTGCAGCTATGCACACGGAGTGCACCTTTTGCTTTACCCTATAATGTCACGCTGTGCATTAGGAGTGGAGCGCCCCGGCTGCCTGCCATGCAGGTGTCTGGGCTGCTTTGCTCAGTGAAGTGTTTCCTGGATGTGACTTCAGGTCAACATCCACAACAGTTGAGATATGACCTGGAGTAGTAATAAACCGTCTGCTTCCCAGAAATGTACTTCTTTCCTCAGAGTGGGCATGAAGTAAATGAACTTGTTTGTCCTCCTTTTTGCAG
Seq C2 exon
AAAACACGAGTCCCAGCTGAAGCACCACGTGGCCATAAAGAAGGTGCCTTACATTGATGAGGAGGGAAATCTGGTAAAACCACTAAAACCGAATGGAATAAAGCTGGAGAAGTTTGTGTTTGATGTGTTCCAGTTCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009090:ENSGALT00000034191:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(16.4=100)
A:
NA
C2:
PF0170413=UDPGP=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAGAAGGCCTACCC
R:
AGAGAACTGGAACACATCAAACACA
Band lengths:
336-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]