HsaINT0175989 @ hg19
Intron Retention
Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:HGNC Symbol;Acc:28082]
Coordinates
chr9:139973708-139974594:+
Coord C1 exon
chr9:139973708-139973901
Coord A exon
chr9:139973902-139974453
Coord C2 exon
chr9:139974454-139974594
Length
552 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCTGCTCTCCCGTGCCCCAGGGA
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTGGTGGAAAAGGCATACCCCGAGGAGCCCGTGGGCGTGGTGTGCCAGGTGGACGGTGTCCCCCAGGTGGTGGAGTACAGCGAGATCAGTCCTGAGACCGCACAGCTACGTGCCTCCGACGGGAGCCTGCTGTACAATGCAGGCAACATCTGCAACCACTTCTTCACCCGAGGCTTCCTTAAGGCGGTCACCAG
Seq A exon
GTGTGCGGCAGCAGGTGGCTGCGGATTGCCGGCCAGAGCCGCCTGCGTTGACCAGGGACCCGCGGGGTCCCAGTGAGCTGAGTGCCCTGGGCCACAGCGGCTGTGGTCAGGAGTGGCTGTGGTCAGGCACGGCTGATGGGTCGGGGTGGAGAATGGATCCTGAGCTTGCAAAGGCAGAGGTGCTGGAGATCAGGCACAAGCCGTGCTCAGCAGGCAGCTGCTGTAAGGCTCTGTGATCAAGTCTGCCATCTCCTCCTTCTGGGGACCTGCCCTGGTGCCCAGGGTGCTACCTCTGCTCTGGGGCTTGCCAGTTTGTTTGCCTGGGCAGGGATGTGGCTGATGGTGCCTGGCACTTGGCACAGGGATGCAGGGAGGAGGCCTGTGCCTGCTTCTCCCTGGAGATCTGGCCCTACTCTGCCGCTTCTGTGCCCTGTAGTGTCCTTCTGCCATCCTGTCCCACCCAGCTGGGTGTGCTCAGAAGTGGGGACAGAGCCCCCAGCGGTGCCATATCTGATCTGTTTCTTTCCTCCCCTCTGCTCTCCCGTGCCCCAG
Seq C2 exon
GGAGTTTGAGCCTTTGCTGAAGCCACACGTGGCTGTGAAGAAGGTCCCGTATGTGGATGAGGAGGGGAATCTGGTAAAGCCGCTAAAACCGAACGGGATAAAGATGGAGAAGTTTGTGTTTGATGTGTTCCGGTTTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-UAP1L1:NM_207309:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(21.3=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAAAAGGCATACCCC
R:
TAGCAAACCGGAACACATCAA
Band lengths:
334-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)