GgaINT0125232 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2043404-2045769:+
Coord C1 exon
chr17:2043404-2043464
Coord A exon
chr17:2043465-2045610
Coord C2 exon
chr17:2045611-2045769
Length
2146 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGTTTATTGTGTTTTTTCTTTTT
3' ss Score
-6.81
Exon sequences
Seq C1 exon
GTTGTGACTAGGCTTATTCACTTGCTGGGCGAGAAGATCCTTGGCAGCCTTCAGCAGGGAG
Seq A exon
GTAAGAGTCATTGCTGGACTGTTCCCATCCATTCTGGTGCTTCTTTGGAATTAGAACTACGTCGTTAAATTCAGAAAAAGAAAGCAACCACTTGACAAGAGAACTTGTCCCTAAATATTTTTGCTGTTGGTGAATGTTAAATTTGGTATATGTAAGTACACCATTTCTTTGGTGGGGAGATGTGGCTGTATAAGGATGGGAGTGGAATGATTTGCGAATGAGATGGAAAACCACTGCTGTGTACGTGCAGTGCTATTTCTATGAAATCTCTTGCAAAAGAACAGCTCCAAGGGATCGTTAGAAATAACTGCCATGATAGACCTGAATCCAATAGTCATGCTGAGTGGCATCTGTGTACTGACTGACTTAGTATGTCTGTATTTGCATTATCTCAATGAATTGTCTGAGAGCAAATGGTTCATTATGCATTGGTTGGTAAGTTTTATGTATGTGGCAGAGGCAAACCAAAGTGAATTTACTAATTGAAGTGAGTAGGAGGAAGTTTCCTGTAGTTGGTTGTTCTTGAGCAGCTTTTAACAGAAAACAAATGTGTGTTAACCACTGATTGTGTCGTGGGATTCTTTGCTGTTGTGGCATTTTGATTTAATAGAAAAATTCTCTATTTCTTTTATTGCTGTTTTATGATATTCCAGGGTGACTGGAATTGAAGCTGTCACCTTGCAGGTTTTGAAGCCATTTTGAGGAAAGGATTTCCAAGTCCATTCTTTAAGTGCATTGTATACACCATCAGTTTTGTCTATATCTCTAGCTGTAATTGTTCTTCATCTCTTGTGCATGCTGAAATGCCTTTGTGACCTAGGGCAGAGTTTGCACTGCTTGGGAAATGGGACAACATGTGCTCTGGAGAAGATGGAAGGAAAATTAGTGGTAGGCAATAATAGGAGCTGGATCAGAGAACAGCCATTGAAGTTCTGAGGAGAGAAGGACCAATGGAGATGAAAGAGTGGAGCAGTGATATGTAACTTGTTTGAACCTACAAATACCTTCTTGAAGATCACCTGAAAGAGAGAAAAACTATTTAATGTTCTGTGGAGAGCTATTTTAGAAGACTTGAATATCTCTAGTGCTGAATATATTTGAAAAAGGTTTATCTGGCATTTCTTTGTGTCCTACAGTGTACAATTGATCTTGCATATGCACTGTAAATGAGTTTTCATATCAATTACAGTATAACATGTGCTTCCATATGTCCATCTCGAGAATGGCACGTGTTGGAGCTGGATAAAATAAGATGAGCCGGTTGCTAAATCTTAACTTAGATGACATTGAGTTTATTATATGCTTAGAGTTGAGTTGGCAGGTGCTAGCAGCAAAGTTAGATTGTCTGAGAGGGGTTATAGAGGAAGTAAATTGTATGAAATCAAAAAGGACTGTTTGTAGAACACACCTATCGTTCTTTTCCTGAGCTAAACTCTCTGGGAAGATCTTTGTTACGTGCATCAAATACTTCTGTCAAAAAATGCTTTTCTCTGCCCATAGCCTCTCTGTGTTGCTCAGCCTATTGCAATATATTGGAGATGCTTCCACAGTTGCTTTGCATCTGTTTTAGAGATTCCATATTTTATTCAATATTCATGCACACCTATCTGTAAAGATCCACATTTTCCCTTCTTGGAGGGGAGTGAAAATAGATGTGGATACACGTTTCCTATAGAAACTTTGTTGAAAATGTGCATTTATTTCCTTGATCAGGAATACCATAAGAAGTGGGTATTTATTTCTGAGGTATTTGGATGCTGACAACAAAACTGGGCTTTTGCTATTTGAGATAATTCCCCTAGAGAGACAGACTGATGTCTCAGTGTTGTGGCTGTCCATGGTGCTTCGGAGTGCTGTTTGGTCTTTTTCTTAACAGGTCAAGTAAAGGCACACTGCATTTTACCTGTTTCTATCACTCAGATATCATTAAGTTTGCTCAGCTTTTACCAACATCCTGTGTCATCTGCTGGTAATGACAGAAATCCTTTTTGTTTTTTTCCTGTTGTGCATGGATGCAGAATCTTTCCTTTTGTGTGAAATGGAGGATGATGTGTTTAACTTTGAAGCCATTCAGTGATACTTCCCTTACTGCCTCTGGATGACAAGTGATGTGGCTTTCTTGTTTCTGTTTATTGTGTTTTTTCTT
Seq C2 exon
TTTCAATAGGCCATCCTTTTGGATTGCACAGCCCAAGCAGCAAATGGGATGCCGGAAATCCTGCCAGCAATCTCTCCACAATAGCAATTATGCCGGTGTCTGAAGAGGTGCCACTCACTGCTTTCACTCTGGAGCTCAAGCATGCTCTTAGTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]