RnoINT0114529 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2228947-2237496:+
Coord C1 exon
chr3:2228947-2229016
Coord A exon
chr3:2229017-2237346
Coord C2 exon
chr3:2237347-2237496
Length
8330 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCTGCTTCTATTCCTACAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTTGTAACCCGACTGATTCATCTCTTGGGTGAGAAGATCTTGGGCAGTCTCCAGCAGGGATCTGGGACAG
Seq A exon
GTGAGTCTCAGCTCTGTCTTGGAGCTCTTCCTCAGTCCCACGAACATACTGCCCCACCTTCCCCTGGCTGGGCAGACCTCTGGAGGGAGCATTGTGGGATACTGTGCTGTATGACTCCTGAGAACATCCGGGAAAGTCTCACCAAGCACAACTCTGAATAAGGAGGGGTTAGCTTTTTAACAGTGCCAGTGTATTTTGCCAAGCTGTGGCTCAGTGTGGGCAGCACAGAAGGACACTGTGATCTAGCTACCTTGTGTTTACAAAGAGGAAACAAGAGGATGAGGCCTCTGGAAGAGTGGTACAGTTGGGACTGCTGTTGTCTGTCACTGCCAAGTGTGAAAAGATGGTCTGAGAAGTGTGGGTGTCAGGAACTAAAACTGCCCCAGCATGTGTGTTTTCTTCTAGCTCTAAGAGTGGCCCTAATTTGGGAGCCACTGGTCACTGTGTTCCAGAGCTGCCTTCTCCCCTGAATCCCACATACTCTGACCTTGCTCTCACTGTTCTGTGCATAATTTGCCTGTGGCTGTCTCCTGCCTCCATCTCTGACTTCCTGGCCTGCGATACTGGTCTATATTTGTGCATGCCTGTGGTCCATCCCACTCATTCTGCTCTTCTTATGTTTCCTCTTCCTCTAGTTCTCCAGGCTAGCTCACTTGTGTCCTGTCCCTCTGCGAGTATAAGCTTCCACTAGTTCTCCAGGGTAGCTCACTTGTGGCCTGTCCCTCTGCGTATATAAACTCTACATCCGTTGTCACATCTGACCCTGGTTTACCGAACTGAATGTTTGTAAGGACAAATTCACAGGTAAACATGCTGTTTAACTCTTTACTCTCAGTACACCTGGTCATTTGGGTCACATCTGATATATATTTGTAAAGATCTCTTTATTATGTATACAGTGTTCTGCCTGTATGTACACCAGCATGCCAGAAGAGGGCATCGGGTGTCATTACAGATGGTTGTGAGCCACCGATTTGAACTCAGAATGTCTGGAAGAGCAGCAGTGCTCTTAACCTCTGAGCCGTCTCTCCAGCCCACATCCGGTGTTTTAGGTTTATGTTAAGCAAACTGTGCGCTTGCAATGCATGCACAGCAACGGGAAGCTGTGATCCACACTGAATTCATCTTAACTTCATCCTCTCTAAGGCTCTCTCTGTGTGAGACCGTGTGCTGAAGTTCTGGGTGGACATGAGTTTTAGGAGAGAGCACACAGTTCACACATAGGATTTCTTTCTGTCTTTCCTTTCAGCCTATCCGACCATTGTGTCTGAAATACGTTTCTTAAGAAAGATATAGAGAAGTCAAGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGTGCCTTGTGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGAAGTCAAGTTTTAAATGAGCTCTTGTGGCAGTGTTTGCCTTACGTTAACCACGTGGACCGTTTAAACCTAACATGACCATTCTGTTAGGGTTTATGTCTGCTATCTTGTTTTTATTTCCTTCCAATATTAGCTTTGATTACTCAGCCGTTTTTTTGTTTGTTTTTCTGTCTTACAAACTTTATTAGTCTGGGAAAAGGGGGACAAGAAGCTCCTGTCTCTTCCGTCCACTACTGTTTACCATTGCCATTGACGGGACAGTTCACATGGTCGGGGGAGGACAGAAAGACCTTGATCTTGGGCCAAGCGCTGAGGCAAGCCACATACAGAGAGAGAGCAGGGGGAAGTTGTCCAGGCCGCCAGGGACCGGGACTCAGCAGCAGGTCCAGCAAGTTGTAATCTGGTCATCCATGATGAAAGCTTTGCCTCCCTGGTCCTGGGACAGCAGGGTCTCAAAAGGCTTCAGATGCCCAGGCAGGGCCTTCACATAGTCATCCTCACCATTCTCATAGTGTGGACGAGGATGACACATTTGCATCGAAGGTCGTCCACTCCATCCCCTACCATATCCACCAGGGCGGCCTCCCTCTGGTCGTTCCCATAAAACCCAGGAGCCTCAAGATGGCATTAGATTAGTAAAGGGTGAGGTCTCCATCCTCAAACTTGGGGAGCTGCCCATAAAGACAAGTGGGCTTGAGTGAGCCTTGCATCCAGACATCTATGGTAACCACCTCCTCCTTCCAGCTCTGGCCCTGGTCAGCCAGCAGCATGCGCATGGCCTCACAGCGCCTGGAACTGGGAAGTAGACAATGGTGTATGGCGGCATAGCTGCTGGGTAGACAGAGGTGTGGACTCAGAGCTGCACAGACAGCCAGGTATCTCGGGCGCAGATGCGAATACTCAGCCGTTTTTAAGCATCCTATTTGTATGAACTCTGATTTACACACACACTGTTGGACGAGCTCTGTGGTCACTCTAGGGAGAACAGTGGTTTTCATCTTAGCTGGAATGAGCGTTCCCGATCAGCTACTGCTCAGGTCACGGCATTCTGTGGCCTGCTCTTGATGTGTTATGGGGTTTCATTGTTGTTGTTTGCTTTTTAAGATTTGTTTATTTTTGTCTTATGTGTCTGGGTGTTTTGCCTGCAGGTGTCTGTACAGTACTGTATGCAGTACCCACGGGGGCCAGAAGAGGGCGTCAGACCCTCAGGAGCTGGAGTTAGAGACAGTTGTGAGCCATTGTGCTGGCAGTTGAGCTTGGTCCGGGAGGAAGTACCATCTCACCAGCCCCTGAGTTGTATCTTAGCCATCACTTCTTCATGCCTTGAGAACCAAAGATGTGCTTTGAAAAGTCTGAAACTTCCTGAGTGTCGTGTCAGCATTTAGAAGTTCTGAATTTAGGAACATTTGCCACTTTCAAATTAGGAATGTTTGATCAGTAATCTGGAAATGTTCCAAAATCCGAAAAAGTCAGACCTCCAGCCCACCCCAGCAGCTTGGCTTGAGCCCCACAGCACTCCTCGGCCGCAGGACCTGCCCTTCATCTGACCTCATCCTCACTTTTCAGAGGCTTGATAGCTTGGTGTTTCTGCTGTCTGGGGTTACTTTTACTTTATTCTGTAGATTTGTATCTTTTTAGCAAACTCGGGGAATCGTTAGCCCTTTTTTCTTTACATCTTCTTTCAATCCTGTATTCTTTCTTTTCTTCTGGAAACAAAATGTCACAAATGCTGGGCCTTTTGTTATTGTCCTGAAGGAATCTGGGACACTGTTCACTATTTTATCTCTTTGTCCCCATGATGTTCAAATAGAATTTTCACCGTCCTCAGTGTCACCTGCTCTTTTCTGTCACCTCGATTTTCCTCTTAGCCCATATAAAGTGGTTTAAAACATTTTTTTGGTTATTTTTATTTTGAGACAAGATCTTGCTGTGTATCCCAGGCTGGCCCTCAGACTCATTATATAGCCCATACTGACCTAGAACTGGCCAGTTTCCTCTGTAGTCTCATAATCCCCTGTTGGGTTTCCAGTGTATGCTGCTGTCACTCCTGCCATGTCTTGTCCATCTGTCCAACTGTGACTTCTGTCTGTCCTTGTCCCACCCACCACANNNGNGNNCCACCCTCAAAACTTTTCATTGTTGTATTTTGGTTCTTCTCCATTTTGCTGAGGTTTTCTGTGTTTAAAAGTGTTTGTGACTTCATGATTGCTGGCTGTAACTAGCTGTATTTCATTATTCCTGGCAAACAGCTCTGACCTTTGTGTTGTTATCCTGTGACTGACTTTTCTCATTCAGATTAAGATTCTTTGCTCTCGAGGCACACACCTTTAATTCCAGCACTCTGGAAGCAGAGTTCAAGGTTAGCCTGGTCAACTAAGGGAGTTCCAAGACCGAGACTACACACAAACACACAAGAATGTTCTAGATGTAATCTGCCAGGAAATGTCCCTGTCTCCAAACAGACAATGCTCCCTGCTCTTGGTGTACCTAGTAATTAGTGTATACCAAATTCTTAATATAGTAAATAAAATAAGTATATACTTTTGAATATTACATACTATTTAAATCTTCTGTGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCACAGCTCAAGTTCTGCCCTAGTCTTGTGGCTATGGTAGTTTGGTCAGTCTGTGTGTCCTGAGCCAGTAGCCGGTATGGTTGCTAGGACTCTGCACTGCTTTGTTCTGTCCCTCTGTGGGGACTGTGGAGAATGAGGTACCAAAGAGGGCCCATTGTAGGCTTTCCTACTGGAACCATGGAGACCATTTGCTTCATTCCCACAGCTACCTCTTGGAGCTGAGGGCTGTGTGAGGAGGGGGTGGTGCCAGGCAGCAAGCGCTGAGGGCATTGGTCAGGGAAGATCAGGTGCCCAGTCCATGAATGTCAGGACACTGAGCGGGGCTGGCTTATTATCTGCTTTTCTGTTTGTTTAGACATCCAGGCACTTTGGTTTTGGACAGTTTGAGATGTTTATTTAGCAATAGAATTATTTTTTATAATAACTATAAAACTATAGCTGTTAACTAGCCATTTTGTTCAATAGCTTTTCTCACCAATAGACCAGCTGGTATGCCACCACTACCGGCTTAAAGACCAAAGAGGGTCATTCATTAGGCGTTTTCCCCACTACCAAGCATCTCCCCTCAGCTCTATTTTTGTTTTTGTTATTGTTGTTGGGTTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCTCTTTTTTTATTAATCAATTTATTTACTTTACAACCCGATCTCACTTTCCCTCCTCTCTCCCTGTCCTTCCTCCCCACCTCCCCCATTCACTCTTCCTCAGAAAAGTGCAGGCCTCCCATGCATTGTCAGCCAAACATGGCACATCAAGCTGCAGTTAGACAAGGTGTCTCATAATAAGACTGGACAGGGAGCCCAGTAGGAGGAAAAAGTCCCACGTGCTGGAAAAGAGTCAGAGACAGCCCCTGCTCCCACTGTTAGGAGTCCCACAGAAGACCAAGCTACACAACTGTAGCATGTATGTAGGAGGCCTAGGTTAAGCCCATGCTGGACTCCTGGCTGTGAGCCCCTATGAGCCCCGATTAATTGATTCTGTGGGTTTCTTGTGTTCTTGACCTCTCTGGCTCCTACAGTCCTTCCTCCCCCTTTTCTACATGATTCCCTGAGCATCTCTGCCTAAGGTTTGGCTGTGGGTCCCTGCATCTGTTCCCATCAGTTGCTGGGTGAAGCCTCTCTGATGACAGTTGGGCTAGGCACTAATCTATGAGTTAGCAGAATATCATTGAGAATCATTTATTATCCTAGGCCTCTGGGCTACCCAGCCTCTGCGTCCTGCCCTCCAGGCAGTGTCAGGGTGGGCTCCCTCTAATGTCTAATGTCTGCACTATCCATTGGTCAGCCACTCCCTCATGCACCGTGTCTTTACCCCAGCACATCTCATAGGCAGGACAAATTATAGGTCGTAGGTTTTGTGGCTGGGTTGGTGTCCCAATCCCTCTGTTGGAAGTTGTGCCTGGTTACAGGAGGTGGCCGGTTCAGGGTCCATATCCCCCATTGCTAGGAGGCTGAGCCTGAGTCACCTTTGTGACTTCTGGGAGCTTCCATTGCACTGGGTTTCTAGCTCATGTCTGAGATGCCCCCAATCCAGCTGTATCTCCCAGTCCCCTCTTCCTCCATCCAGCTCCCACCAGATCCCTCTTATTCCCATCCCACCTGCCACCTGTCCACCTTCAATCTCTGTTCTAGTCTCCTTCCCAGGGAGATTTATCTGCCCCACCCCCACCCCAGCCCTCTTGTTACTCTGTGTCCAAGGATTGAAACATGGCCATCTTTTACTTTACAGCTGATACACACTTATAAGTGAGTACAGGCCCTGTTTGTCTTTCTAGGCCCAGGTTAACTCACTCAGGAGGATTTTTTTTTCTAGTTCCATTTATTTGCCTGCAAATCTCATGGTGTTATTTTTTTAAACAGTTGAATAATGCTCCACTGTGTAGGTATAGCACATTTTCTTTATCCACTCTTTGGTTGAGGGGCATCTAGATTGTTTCAGTGTCTGGCTTCTCTGGATAAAGCTGCTATAAACGTAGGTGAACATGCGTTCTCGTGGTATGGAGGAGAATCTTAGGTCTGTGCTCAGGATTGGTGTAGCTGCCTGGGTTTTAAGGTAGATAGATTCCCAAATTCCTAAGAAACTACCATATTGATTTTCAAGGTAACTATACCAGTTTGCACTCCCACCAGCAATGGAGGGAAGGGTTTCTCTGTGTGGCTCTGGCTGTCCTGGAGCTTAGTACATAGGCCAGGCTGACCTCAAACCCACAAAGATCCTCCCGTCTCTGCTTCCAAGTGCTGGGATTACAGACTTGCAGCACTCTCCTTGGCCTTTCAACTCTTCAATGATCCTGCAGTGACTGTTTTTGTATATGTGTGTACATGAGGAATAGTGCGTGTGGTACACGTAAGGTATATATGTAAGGCAGATGTATATGTTATATATGTGGTGTATGTATGGTACCTAGGTGGTATGTATGGGAGGTGTGTGTGTGTGATGTATATGATGTGTGTGAGATACATACATGAAGTATGTGTAGGGTGTATGTGGTATATGTACGACTCAGGAGGGTGCGTGTAGTGTGAGTGGTATATATACGATGCAGCAGGGTGTGTATAGTGTGTGTGGTATATGTGTGATGTAGGAGGATGTGTGTATTGCATGTGGATTATGTGTATTTAGTGTCTATGTGGTATATGTATGATGCAGGAGGGTGCGCGTATTGCATGTGTATTATGTATATGTAGTGTGTGTGTGGTATATGTATGATGCAGGAGGGTGTGTGTATTGCATGTGTATTATGTGTATGTAGTGTGTATGTGGTATATGTATAATGTAGGAGGGTGTGCGTATTGCATGTGTATTATGTGTATGTAGTATGTATGTGAGGTACCTGTATCCTCTTAAGAATGCAGACTTGTTTCTGCTTGTTACTGCCTCCTCTCCCCTGCTCTTAGGCTTGCTTGGGATGGCAAACCCTTCCTTAGCTCCCTTACTGCCCTGAACCTGTGCATCTGGAAACATGGTTGCTGTCTTGGCGTGGCCCAGCTTCACGAGTTGCTGGCTCTCCTTGTACAGATCACTGACCAGGGCTGCACATAGCACGGGGCTCCACCTGGACCTCTGCACCTGACTTCAAGTCAGTCTCTGCAGACGCATGTGCATACCACTGGGATCATGTATCCGACAGTGTCTGGAAGCTGCAGAAAAGTCACCAGCCATTTGGAAACTGCTTTTAAGGGAGACAGGGAGACAGGCAGCTCAGGCCTGAAGATGGGTGTGTGTCTGTATCAGAGGAAAACAGAAGGTATGGGCAGGACTTTGTAGTGGGCCATCAGTGGCCAGGGAGCCCATAGCATGGCAATGCCACAGGAAACCCTGGTCAAGTGGGGCTACGTCTACCAGGTGGCATGAGATGAGCTTAGCCATCTTCGTGGAAACAGGAGGGACACACACCAAAAGAAGAACCTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTACCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAGAAAAAAAAAAAAGAAGAACCTATAGTAGGATCTTTTGCTGAAGGGTAGTGAAATAAAAGTCTTCGGTCTTGCACTGTGTTAGAGGGGTGGCCCCTTGTCCCCTGCAGCTGAGTAGAGCCTGGGGAGAAGAGCCCTGGGTGTCTAGGTAAGGAAATATGGACCTGTGGCCATCATGGCCTTGGGAAGGCTCTGCCTGCCTTGGTCTCTCCTCCAAGCATTCCTTCTGGGACCACCCAGCACAGCTGCCCCTGCCCAGCACAGCTGCCCCCGCCCAGCACAGCTGCCCCTGCCCAGAACTGTACTGATTCTCTGCTTCCTTTGGGTTTGAAAACCCCACATAAATAAGAGATAGTAAAGGTGTGTTTGTTGCTCTTCTAAATTTAGCATTTCTAGGTTCAAAAGATAAGAAACCAAAAAACTGTAAAGAGAAGTCCTTCCCAGCATGGTAGTGTATATGCTATTAACACAGGCGGATTTGAGGCCAGCCTAGGCTTCGAGGGGAGGAGTGTTCTCAGCTGGCAAAATGTTTTCCAGATTTTCTTGCTCATTGAGTTCCTAAGCTCTAGAGGGTCAACATGGTTTTGGTACTGCTCTCGGGACTGCTTTAGTCATTGGGAAACTGAGAGCAGACCCTGGTCATAGAGGGCGGCACCCTGCCTCATCTGTAACCATGGAAGCCGTGCTACTGGTGGCCCAGTCTTCCAAGGTCATTCCTGCTTCTATTCCTACAG
Seq C2 exon
GTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGAAACCCCCCTGGCAACTTGTCCACGGTGGCAGCAATGCCTGTCTCTGAAGATGTGCCCCTAACTGCCTTTGCCCTGGAGCTCCAGCATGCCCTCAGTGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]