GgaINT0125322 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:945429-945765:-
Coord C1 exon
chr17:945693-945765
Coord A exon
chr17:945603-945692
Coord C2 exon
chr17:945429-945602
Length
90 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
CCCCTTTCTCCCCACCCCAGGGT
3' ss Score
10.02
Exon sequences
Seq C1 exon
TGTGGCAGTGTGGCCGAGCACCGCTGCGACTTCGTGTGCCACTGCGGTGACTGCTCCGATGAGAACCAGTGCG
Seq A exon
GTGGGTGCCTGTGAGCGGGTGATGGAGTGGGGGCACCGTGGCTCCCCAGGCTGACCCAGCTGTGCCCTGACCCCTTTCTCCCCACCCCAG
Seq C2 exon
GGTACCTGGGGATCTCAGCCGTGCTCGGCTCCCCCTTTACCTGTGATTTTGAGGATGATGACTGTGGCTGGCGGGATGTGAGCACCTCCACCTACAGATGGGTGCGGGGCCGGGCCAGCCTGGACTCGTGGGGTACAGGGCCACACTCAGACCACACCATGGGCACAGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062918=MAM=PU(27.2=74.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGATGAGAACCAGTGC
R:
CATGGTGTGGTCTGAGTGTGG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]