GgaINT0125325 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:944608-944915:-
Coord C1 exon
chr17:944770-944915
Coord A exon
chr17:944693-944769
Coord C2 exon
chr17:944608-944692
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTTCACCTCTCACTGCAGCTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GGCTCAACCAGACTGCATGCCCCACATTGCGCCTGGCTGTGGCGTTTGGGGACACAGTGGTGGAGCTGTGGCGGAGCCCCGAGCACAGGGCTGAGGGCTGGCACCAGCTGGTGGCGTACCCTGGCCGGATCAAGGGGCAGTTCCAG
Seq A exon
GTGAGATGGGGATGGTGGGTTACACTGGGGGCAGAGGCTGTCAGGGAGGCTCACTCAGCCTTCACCTCTCACTGCAG
Seq C2 exon
CTCACCTTCGCCCTGACACAGCCGCCCGCATGTGGGGCAGTGCTGGCACTCGATGACATTGTCTTCAGGAACTGCGGCTTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(29.6=100)
A:
NA
C2:
PF0062918=MAM=PD(16.0=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTGGGGACACAGTGG
R:
GCCGCAGTTCCTGAAGACAAT
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]