GgaINT0125331 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:942318-942688:-
Coord C1 exon
chr17:942600-942688
Coord A exon
chr17:942501-942599
Coord C2 exon
chr17:942318-942500
Length
99 bp
Sequences
Splice sites
5' ss Seq
TGAGTTAGG
5' ss Score
-7.14
3' ss Seq
CTGCCAGTGCCACACTCCAGTCT
3' ss Score
0.01
Exon sequences
Seq C1 exon
GTGCTGATCACGGGGGAGGCGGGCAGCGGGGGCTCCGTGGCTGTGGATGACCTGATCCTGTCTCCGGGCTGTGTGCTGCAGCAGGGTGA
Seq A exon
GTTAGGGCGGGGGGCACGTGGTGGGGCCATGGAAGGGCAGTGCTAGGGCGCTGCCTGGAGCCAGGCTCGGCCTCACACCCTGCCAGTGCCACACTCCAG
Seq C2 exon
TCTGGGGCTTTTGGCATCAGACTCAGCTCCCGTGGCACTGCCGGGCCGGGCTCGTGCCAGCAACTGCGTGGCCGAGGAGTTCTCCTGTGATGACGGGGGCTGTGTCAGTGCCGAGCTGGTCTGCGACTTCGCCAAGGCGTGTGCTGATGGCTCCGATGAGAACCACTGTGGTGAGAGCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(16.4=83.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=67.3),PF0062918=MAM=PU(4.3=12.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTGGATGACCTGATC
R:
CAGCTCGGCACTGACACAG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]