GgaINT0125334 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:941433-941743:-
Coord C1 exon
chr17:941613-941743
Coord A exon
chr17:941541-941612
Coord C2 exon
chr17:941433-941540
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ACCCCCACCCTCACCCCCAGGTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
Seq A exon
GTATGGCCAAGGGATGGCCCAGCTGGGCGCAGGGCCACGGCCCCCAGGGCTCACCCCCACCCTCACCCCCAG
Seq C2 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(35.5=100)
A:
NA
C2:
PF0062918=MAM=PD(21.5=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACTCCACGGACATGAC
R:
CACTGCACGAACGTCACGT
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]