GgaINT0125342 @ galGal3
Intron Retention
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:938545-938900:-
Coord C1 exon
chr17:938810-938900
Coord A exon
chr17:938692-938809
Coord C2 exon
chr17:938545-938691
Length
118 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TAACTCACGTTTCCACCCAGCAT
3' ss Score
3.53
Exon sequences
Seq C1 exon
GTGGTGTTTGAGGCGGTGGGAGCTGGGAGTGAGCGCAGCTACATGGCACTGGATGACCTGCGTGTGTCAGATGGAGCCTGCCCTGAGCCAG
Seq A exon
GTGGGAGCATGTGTGCCGAGCACCCCATGGGGACACGTGGCCACAGGGATGGAGACAGCCCTTCCATCCACCACCAGCACCCAGCCGCACGTGCGTCTTAACTCACGTTTCCACCCAG
Seq C2 exon
CATCCTGTGACTTTGAGTGGGACACGTGCGGCTGGAGCAGCCCCTCAGATGAGCGCCTGCACGGCTTCACCTGGGGCTGGAAGAGTGGTGTCCCCCTGGCCAAGTACCCCGGCCCTGAACAGGACCACACCCTGGGCACAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995:ENSGALT00000014630:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.260
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.1=90.3)
A:
NA
C2:
PF0062918=MAM=PU(28.3=94.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGAGGCGGTGGGAG
R:
ATCCTCTGTGCCCAGGGTG
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]