GgaINT0125413 @ galGal3
Intron Retention
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7561176-7561608:+
Coord C1 exon
chr17:7561176-7561220
Coord A exon
chr17:7561221-7561533
Coord C2 exon
chr17:7561534-7561608
Length
313 bp
Sequences
Splice sites
5' ss Seq
GAGGTATCT
5' ss Score
7.27
3' ss Seq
TTTTTATTTATTCTATGCAGGCA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTTGAATGCATTGATGAAAAGCAAGCAAATGAGGCCTTGAAGGAG
Seq A exon
GTATCTGCTGTTCTTTACTAGCTTCGCTTACAGAGGCCGAGCTCTTTAGCAGAACAACGTTTTATCTGAGCATTAAGTATGTAAATAAGGGGGAGGGCAATCTCAGGGGTGTTCTCCCTGCCCTCTGCTTGAGTTCATGCCAGAATTTTGTATTAAATATTCCTATATTTGAATATGTAGATTCAGAGTCACAAACAAAAATGTAGGGCACTAAGCTGAATTCCTGTTACCTTTTCCAACAACAGCAGATAGGTTAAAGTAAGTGGAGTATGTGGGGTTTTTTCATCAGTATTTTTTTATTTATTCTATGCAG
Seq C2 exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(5.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]