GgaINT0125414 @ galGal3
Intron Retention
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7561534-7562368:+
Coord C1 exon
chr17:7561534-7561608
Coord A exon
chr17:7561609-7562263
Coord C2 exon
chr17:7562264-7562368
Length
655 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GGTGTGATGTTTTATTACAGATA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
Seq A exon
GTGAGAATTAACTAGGATTAGTTATAGTTAAAGTTGTAGGCATGTAAGCATTTTTATGTTTGGGCTCATTGCTGCAGGATGCTAAATAAAAGGTTGTTTAGTATGAAATTAACCTGTTTTTTAATTTCTGAATAAATATGGTGAAAATTATGAAGGTATATGGATTGATGTCCATCATGTGGCAGTATTGCATGCTGGCTCAGATTTTGAAATGAAGTTTCTGCTGCTTCTGTCCTGTTTTCTAATGCATACATGATTTTAAGCTGCTTTTGTTCCATCTTCAGCAAACCTGTGTTAGAGAAAAAAACAAAATAAGAAAATTCCCACTTTTATAGAAAGGCAGAAATCCTGAGGTTTTATGCACAAACAATTAGCACTCAGATGAAATTCATGTTGACTTTTATGGATGTATTTTTGACTTGAATTGTCCCATGTTGCTTCATATAAGAAACACTTGATAAAGTTTTGAACAACAGATGCTCTGTTTTTAATATAAGAAAGTAATTACTGTCTGCTTTGTGAGAAATTGAACATCTTGGGACACCTTGGTATTGGTGAACATTACATCTACCAGCTTGGCCAAGTCCTTGGTTTTATCTTTCTTACTGGACATCTGCAAGCAATTAGTCAGTCTTGGTGTGATGTTTTATTACAG
Seq C2 exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAGCACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.9=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]