GgaINT0125540 @ galGal3
Intron Retention
Gene
ENSGALG00000002855 | F1NBJ7_CHICK
Description
NA
Coordinates
chr17:7702163-7705287:-
Coord C1 exon
chr17:7705194-7705287
Coord A exon
chr17:7702326-7705193
Coord C2 exon
chr17:7702163-7702325
Length
2868 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
GGGGCTTTTGTACTCTGCAGGTG
3' ss Score
8.36
Exon sequences
Seq C1 exon
CCGCACTGTGCTGCAAGAGCTGCTGGACACCGACCTCAGCAACGAGGCCTTCCCCTTCTCCACCCATAGGCTCGTGAAAGCTGCAGGATGCACG
Seq A exon
GTAGGACAGCACTTGGGGTCCCAAGGGATGTCTCCTATTGCCTACGGGTTTGTTGGGTGTCTTCAATGGGAAATGGCTTCCCCTGCAATGAGCAGCCAGGTTTTGGGGGTTTTCTGATGGAAAAAGCCAAAAACCACAATGGGAACTGGGCATGGTGGTTGGTGCTTGGTGATGCTGGAGGGAGCGGAGGGCCCTCAGGCAGATGAGGGGTGAGCACTGGTGATAGAGAGATTTATTTGACACTCCGGATCCCTTCCTTTTCCCTTAAAAAAGAAGAAGAAAAAAGAGGTAGGGACAATTTAATATGAAATGTGTCACATCCTCCTGTAAGGGCTGGGGAGCCCGAGGAGTCGGTGCATTTGATCACAGAAGAAGTCTGACAACCTTAAGCTTTCTGTTCAAGCACGGATCATTTTGCATTTGCTGAGACTTCGGGGCTCGTGTCTGCGGTTATGCAATGGGACGTGGGGATGGCCACGTGCCAGGGGCTGAGCCCTGGGGGTGATGGGGGGGATCCGACCCCACTGCCCACCCAGGGGGAGCCGATGCATTTTCAGATACTGTTTTTTCCCAAGGCTGTCATTCAGCAAGAAAACAGCACGGCTGGGAAACAGAATCTCATTTTCTTGCTTTGCTGCTTGCTGACATACTCAGTCAATTCCAGCTAAGCCCCTGTAGTGGTTAAGAATACACTTGGAGAGTCAGGCAGAAATCACCTAAAGTAGAGCAGTGATACTGGTTACGTGGGTCTCTACACAGCATCCATTGGTGTAACAGTGGCTGCAGCAGAAAACAGTGCTTCCATTTGTTTACTGGCAGTGTTGTAGGAAATGATGCAATTTTGGAACTCACTACAATTCTTCCTGAAAGCAGCTCAAGAAAATAACAGCAGGGATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACTTGGTTTGTGACCCCCAAAAGACCCCCCTGCTCTCAGGGATGGGCTTTGCCTGAAGTCATCCTTGGGAAAGGTGATGCTTGCTTGGGGGTTCTGCCATGTTATGTGCTGATGTAGCCTGAAACACCCTTAACAGGAGAGTCTGTGGCCACAAAGTGACAAAACATTGTGCAAACGTTAGTATCAGGGAAAGCCCTTCTGCAGGCTTGCCTTGGCTTCCCATTGACAGTTACCCCATTCAAAATGTTCCCATGCTCTGCTATGAGAATGCCCCGCTGGGGTTGGCTGCTGGTGGCACTGATGGGATGGGGCTTGATGCCACCCCAGGGGTGTGCATGGGGACAGTGACACTGTGGGCCTGGGGGTGCAGCCACAAGCTTTGTGCCAGCCGCCATTGGAGCAGGGAATGGGACAGGATTGAAATTGGGTTAAGCCACACACACGGACACTTTTCATTGGGAATTAAAGTGGCTTTAATTCGAATGCAGGCGGCTGCTGAAGGGCTTGCTGCGAAATCAAATTACGGCTATTTGGATGGTGAGGAAGAGCCTCGCCAGGGCTCAGAGCACTTTAAGTAAGGCACAGACTTGCCTAATGCAGATGGATCCTCCAAAGTGGCACCATGCAGGTGCCCAAACCCACTGTGCTTCCCAAGGAGGGGATGGTGGCACGGGGGACCCTAAAGCCAGCCCTGCTGCAGCACACCACGTATCACCGTCAGCGCTGACAAGCCACAATCCTCCCTTGTAAGAGCTGTGCCAGCCTCACAGCTTCTCCTAATAATCCACTTATCCCTGTGAAAGGTGTAGCAATGTTCTCATCTCCTGGAGTGTCATTGGTTTATTTGCATTTTGCTTCAAGTTAGCAAAAAAATTATATATATATGCATAATAGTAATCCTGTCCTACAAGGGAGAAACTGCTCCCAGAAATGTTTTGGTGTCTTTTAAGTGCAAATGCCCTGATTTAAAGGAAGAACAGCTTTCCTGCCCTCTCTGGGTGAGTTCAGAGGGGCTGAATGCAGCCCAGCACCTCTAAGTGGGAGTGCTGAGGTTTTTGTGCATTAACACAGAGGTTGAACAGAATCAGCTGCAGAGAGAGGAGAGTTCCTGCAGAGTTAATGACTGGAAATTACCGATTGGTTTGTGAATGTATACATATATATATATATATAGTGTCTCTCATTGTATTAAACAGCAGCAAAAGGGCCCCGTTTGAATTTCGCTGCTGGATGTGGGGTAAAGTTCAGGTTTGAGCTTTCTAGAATACTCAGAATGCTTTTGAACTGTTGCTCAAAGACTCAGGAGTTGATGCTATTTCATAGCTCCATTTGAAACTGAACTGAAACCTCGGCTCCCCCTGGGCCTACTCTGTGTGTTACACACCTGTATGCAGCCCCTATTCCTCTCCATGCAAACCTAACTCCCGGCACCCCCAGTTTTCCAAGCATACAGGTTTCCTACAACAAATGGCTTGGCCTTATTGTCAGGATGCTTGGTTTCCTGCAGCAGCAGCCTTGTTGGGGCTCGGTGCATTCAGTGTTGGGTTAATTACACTGCTGGGAGCGATGCTACAGAGCACTGCCTCTGCTGTGGGATGCTGAGCATCCTCATGGGGTGGGCAGGGTGTGGGTGGGGATGCTGGGTTCAGCCCTGGGTGCCAGCAGGCGGCTGCCGGGGGTGGAATGCATCCCCGAAGTGCCACACAGAGAGCTCACAGCAGGACGGTCCCATTGGGATCTGGCTTCTCTGCCCCATCAGCAGTAGAGCAGATATCAGGGACACAGGACACAGTGCCCATAGGCTTTCCCAGGGTGTGCTGGATCAGCAGAGGGAGACAAAGGCCCGGCTGGTGCGGGAGCGTTGCTGCTGGCTGACGGTCCCTGCCATGCTGCACAGCCCTGCTCTGTCCTCAGGGGTTTGGGGCTTTTGTACTCTGCAG
Seq C2 exon
GTGCGTGCCATGAGGCTGTCCTTTGTCGGTGAGCTGGGCTGGGAGCTGCACGTGCCCCGGGAGGACTGTGTCAGGGTGTACCAGGCGGTGATGGAGGCGGGCGCCCGGCACGGCATCACCAACGCTGGCTACAGAGCCATCGACAGCCTCAGCATCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855:ENSGALT00000004499:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(13.5=100)
A:
NA
C2:
PF0157116=GCV_T=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]