GgaINT0125586 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4753190-4753656:+
Coord C1 exon
chr17:4753190-4753243
Coord A exon
chr17:4753244-4753602
Coord C2 exon
chr17:4753603-4753656
Length
359 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GGATTCCTTCTGTCTTGCAGGGA
3' ss Score
8.81
Exon sequences
Seq C1 exon
GGTGATCCTGGCCAGCTGGGAGTTCCTGGAGAGCAAGGCCTCATTGGTCAAAGA
Seq A exon
GTGAGTACCCACCTTCTGGTGGCACTTCTCCATCTTGTCAGCTCCCCAGAGGCTCTTGTCCCTGCTCACCCACAGCCTGTGGGCAAAGAGCCCCTCTCCCAGGCATCCCATAACCCTCTCAGCCCTGCTTGAGTCTCTGCCTTCCCCACAGAGCCCCTTGGCTTGAGCTGAGCTCTCAATGCTCCGCCAAGTAGGGAGACACTGGCTGCTCTATGGGAGGGAATAGGGATGAATGCACAGCCTGAAGCTGGCTGTGGCTCTTGTCCCTTTTCAGGGCTAAGATTGAGAGTCATCTGATGAAAGCATGGGGGAAAAGTGTGTTTGGGCACAGTTTTATGTGGATTCCTTCTGTCTTGCAG
Seq C2 exon
GGAGAAATGGGGCTGGAAGGGGACAGTGGGCCACCTGGTCCAGACGGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958:ENSGALT00000011272:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0139113=Collagen=PU(25.0=93.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]