GgaINT0125623 @ galGal3
Intron Retention
Gene
ENSGALG00000004659 | ZER1
Description
NA
Coordinates
chr17:5885304-5887368:-
Coord C1 exon
chr17:5886932-5887368
Coord A exon
chr17:5885481-5886931
Coord C2 exon
chr17:5885304-5885480
Length
1451 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTGCTCTCTGTCATTTGCAGACA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GATCTTGTTGAGCTCTACCTGACCAACTGCGAGAAGCTGACAGCCAAGAGTCTTCAAACTTTGGTGAGCTTCAGCCACACGCTTATCTCCCTTAGCCTCTTTGGATGCTGCAATATCTTCTATGAGGAAGAGAACCCCGGAGGCTGTGAAGATGACTGTTTGGTGAACCCCACTCGCCAGGTGTTGGTCAAGGACTTCACTTTTGAAGGCTTTAGCCGCTTGCGCTTCCTCAATCTGGGCCGCTTGATTGAAGGGGTCAACGTAGAGACATTGCTTCGGCCTTTGACCTCCCTTGCTGCTCTTGATCTCTCTGGGATCCAGCTGAACGATGTGGGATTTCTGACACAGTGGAAGGACAGTCTGGTTTCCTTAGTGCTTTACAACATGGACCTTTCAGAGGAGCACATCCAAGTGATTGCACAGCTTCACAAGCTCAG
Seq A exon
GTCAGCAGATCTCTTCTTCCTTATTTATCTTTTTCCCACTGATAGGAACCGTGCAAGTCTGTTAGGAATGGGATACGTGCCTTTTCATGGAAAGCCATCCACTGCTGGCTTCAGCTTATAAACATTCCTATGAACAGGCTCACTCATCACGTTCTGACCTGGTTAAAGCCAGACTGGGCTTTGTTTGCCAAAATAAATAAATACACAAAGAAAGAGCTTCCCCCTAAACAAACAAACAAAAAAAAACCCCATCAGAACACCCAAGAGATGGCAAAAAAAAAGGCTATGGATGTACACAGGTACCAGTAGAGTGGTAATCATACTGAAATCCAGTCCTTCAAAACAATTGTTAAACAGGAACATCCAGAGTTTAAACTTTGCTCTGAGGTACAACCAGAACAAACTCTCAGCCCAGCTCAGAGCATCTGCTCATGGCATGCTGTGTAAGTCCACTGTGTGTGGATGGTGCAAAGGAACAGGCACTCCTGAGCTGACAGCAATGACAGCAAAATGACTTCTTGACACAGAATTGAAGCAGTTGCTGTTCAGACTGCACTGTGGTAAAAGAAAAAGGATCCAGGACTTTCTCAGCCAAAAAGAAAGGCCTTACCATTCACATGAAGGATAGTCTGCAGTGGCTTTAGTACAGTCTCTGCAGCCCGCAGACACTAGGGGGTACCACGTTAATGTATGACCTTGGAGTCTCAGCCAGCCTCCTGGGTAACACTGGCTAAATCCAAGTGACTTTAACTCCTGGTGAGTTGCAGTAAAACTTGGTCTATAACACAGACAAATAGAAGACACTTTTGTAGGTATGATGTTGGCTCCTGTCTTAGGCAGTTTAGTTTCTCCCAAAGGATCTCTGCTTGACAGACAAGAGCAGGCCCTGTCCCGTAGGGGACACTTGCACATTATAGCCAGTGAGATTCCCACAACTTCCTCAGCTCCAGGGGTTTCCTCAGTGCTTAAGCATTTAAACATCTGAAGATATATTAAATCATTAGAGAATAATAGCCTGGGGTGGAAAAAAAAATTGAGATTGGCAATGCAGACAAATACTCGTGTCGGTTAATTTGTGGGATGAAGCAATAGATGTTTCTGGGCATGCAAAGATCCTCTAGTGCATCTCAATCACTGGACAGAAATGCTCAGGTGGCTGCTTTGATGGAGCTTGGGAAAGGCAGTTCCTGAGCCTAGAGCAATTTCCTTTGTATAAGCGTAGCCAAATGACTCATTATGCTCCATTTTAAGTAGACCTCCACCAGATATCTGTGTGCTTCTGTTAGACACAAGGCCAGATCCTGCTGCCTGATCCTACAGAACCACATTCCTGTATCTTAGGAAGGAAACAACAATCACCACCGCACTCTGCTTGTCATTTTCCCCTGGCACAGCCACAGAAGCCCCACCTGATGCTTTCCAGGCTCTGAGCTGCTCTCTGTCATTTGCAG
Seq C2 exon
ACACCTGGATATCTCTCGAGACCATCTGTCCAGTTACTATAAATTCAAGCTGACCCGTCGGGTTCTAAACCTGTTTGTGGAAAACTTGGTAAACCTCACCTCGCTCGATATCTCAGGGCACACTATGCTGGAGAACTGCACTATCCCAAACATGGAAGAGAAGATGGGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004659:ENSGALT00000007424:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PU(58.7=18.5)
A:
NA
C2:
PF127992=LRR_4=PD(39.1=30.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTTTGGTGAACCCCAC
R:
CCGACGGGTCAGCTTGAATTT
Band lengths:
346-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]