BtaINT0164258 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99270166-99271043:-
Coord C1 exon
chr11:99270607-99271043
Coord A exon
chr11:99270343-99270606
Coord C2 exon
chr11:99270166-99270342
Length
264 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CACCCCGCCCCAACCTCCAGACA
3' ss Score
6.8
Exon sequences
Seq C1 exon
GACCTGGTGGAGCTGTACCTGACCAACTGTGAGAAGCTATCTGCCAAGAGCCTGCAGACTCTAAGGAGCTTCAGCCACACCCTGGTATCCCTGAGCCTCTTCGGCTGCGCCAACATCTTCTACGAGGAGGAGAACCCCGGGGGCTGTGAAGACGAGTGCCTTGTCAACCCCACCTGCCAGGTGCTGGTCAAGGACTTCACCTTCGAGGGCTTCAGCCGCCTGCGCTTCCTCAACCTGGGCCGCATGATCGACGGGGTCCCCGTTGAATCCCTGCTGCGGCCCCTCAACTCGCTGGCTGCCTTGGACCTCTCGGGCATCCAGACGAGCGATGCGGCCTTCCTCACCCAGTGGAAAGACAGCCTGGTGTCCCTCGTGCTCTACAACATGGACCTGTCGGACGACCACATCCGCGTCATCGTCCAGCTGCACAAGCTGCG
Seq A exon
GTGAGCTCTGAGGTTGCGGGGTTGCTGCGGGGAGGTGGGGGTCGGCAGTCCCAGAAGGTTCCTGAGCCCCCGGCCAGGGAGCACATGGGGCTAGAAGAGACAGTCCCATGCTTTATGCCCCTTGTTCCGGCTGGATCAGGGCTGTTCAGAGCGCCTGGGTCGGCCGTAGCAGGGACCTCGGACTGAAGCATCAGGAGTTTACGAGGCAGCCCCAGTCTGCGTCCAGCTCCTGACCCGTGACCCCCACCCCGCCCCAACCTCCAG
Seq C2 exon
ACACCTGGACATCTCCCGAGACCGCCTTTCCAGCTACTACAAGTTCAAGCTGACTCGCAAGGTGCTGAGCCTCTTCGTGCAGAAGCTGGGGAACCTGATGTCCTTGGACATCTCCGGCCACATGATCCTGGAGAACTGCAGCATCTCCAAGATGGACGAGGAAGCAGGACAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208:ENSBTAT00000013468:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCTGGTCAAGGACTTC
R:
TGTAGTAGCTGGAAAGGCGGT
Band lengths:
301-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development