RnoINT0167585 @ rn6
Intron Retention
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8675244-8676163:-
Coord C1 exon
chr3:8675727-8676163
Coord A exon
chr3:8675460-8675726
Coord C2 exon
chr3:8675244-8675459
Length
267 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
TTCCTTGCTGTGGCCTAAAGGAG
3' ss Score
3.7
Exon sequences
Seq C1 exon
GACCTGGTGGAGCTGTACCTGACCAACTGCGAGAAGCTGTCCGCCAAGAGCCTGCAGACGCTGCGGAGCTTCAGCCACAGTCTGGTGTCCTTGAGCCTCTTCGGATGTGCCAACATCTTCTACGAGGAGGACAACCCGGGCGGCTGTGAGGATGAGTGCCTGGTCAACCCCACCTGCCAGGTGCTGGTCAAGGACTTCACCTTTGAGGGCTTCAGCCGCCTGCGCTTCCTCAACCTGGGCCGCATGATCGACGGCATCCCCGTGGAGTCACTGCTTCGGCCACTCAACTCCCTGACTGCCTTGGACCTCTCAGGCATCCAGACAAGCGACGCCACTTTCCTAACACAGTGGAAGGACAGTCTGATGTCCCTTGTGCTCTACAACATGGACCTTTCAGACGACCACATCCGTGTCATTGTCCAGCTGCACAAGCTGCG
Seq A exon
GTGAGCTGCCCACTTAGCAGCCAGGGCAGGAGTTGGGGCGGGAGTTGGGGAGTGAAGCAGACAATAGAAGAGAGGAAGGTGTCAGTCCTGGGTCCATCATCCACAGCAGGGGAACCCTTGCATGGAACAGGGAGAGAGCCCACTCCTTAGACCACACACTAGCTAGTTGAGGGCAATTTAGGGTACCCAAGTCCCAGCAGGCTATCTCTCCAGAGTTCCCTAGAGAAGCTGTGGCAGGCATGGGCCCTTCCTTGCTGTGGCCTAAAG
Seq C2 exon
GAGTAAGATCCTGACCTGTGGCCACCACCTGACCTCCAGCCACCTGGACATCTCCCGAGACCGCCTCTCCAGCTACTACAAGTTCAAGCTGACTCGGAAGGTGCTCAGCCTCCTGGTGCAGAAGCTGGGGAATCTGATGTCACTAGACATCTCTGGTCACATGATCCTGGAGAACTGCAGCATCTCCAAGACAGATGAGGAGGCAGGGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832:ENSRNOT00000035002:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.096
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=32.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGCCACTTTCCTAACACA
R:
AGATGCTGCAGTTCTCCAGGA
Band lengths:
296-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]