GgaINT0125762 @ galGal3
Intron Retention
Gene
ENSGALG00000008984 | C9orf86
Description
NA
Coordinates
chr17:967929-969995:-
Coord C1 exon
chr17:969861-969995
Coord A exon
chr17:968101-969860
Coord C2 exon
chr17:967929-968100
Length
1760 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TTTGCCTTTCTTGTCTCTAGGAT
3' ss Score
12.34
Exon sequences
Seq C1 exon
AAAGTGGTCAAAGAGGAAAAGCCTGAGGAGTCTGACAGTGATCAAGAGGGACCAATAGCTACTCAAATGCTCTCATTTGTTATGGATGACCCAGACTTTGAAAGCGAGGAATCTGACAGCCAGAGGAAGAAAATG
Seq A exon
GTAAATAGCATGCATGAATCGCTGTGCACTGCTGCAGAGCTGAGCATGAAGTGTTGAGGCATCTCAGTGAGCAGGGCTTTCATCTGCTCTCCTGGTCTCTCAGCAGCAGTCACAGCAAGTCAGGTGCTAAGCAACCTGAAGAGGCTGATTTAAGCACAAGCCCATTAATGCTGTGATTGTTGAAGCCATGTGGCAGCTAACTTTGTGCTTGCAGGCTTTAATATGCTGTTTATTCTTAGTAAATTCAGAGCACTTGATCCAGCAGTGTGGAAGGTATGAAATACAAAGCTTATGGATCATTTCACCCAAAGTTTAATATGTAGAAGCGTGTGCATATGAGAGAGAGAGAGAGAGAGCAAGTGAGCTCCTTGCAGTCAATCCAGCAATCAAAAGGCCATAACAAATTTGCATGGCAGTTTCTTATCGAAGCAGGAAAATCTACCTGAGAAGGACTGTCAGTAGCTGGGTTAGCTGTAGTATATCTGTGATGTTCAGGATGTGGGCAGCTGTCCCAATGCAGACTGCAGGGGTTTACCCAAACACAAGGTGCAGCAGAGTCTCTTCTGGAGCTGTTGTGTATTAAAGATGTATAAAACACAAGCATCTTCTCTGGGCTCGTAGGAGCTGTAATTCATTATTTGTGATGAACAGTTGCTTTTCAGATGTACTCCCAGTGTGTAGGTCAGCTATTGTTCAAGAGTGTTTTATATGTTTGCCTCATTCCAGAAACCTGCAGGAGGACGGCTGTCCCAGTTTCTCTGACCTTGGCTGTGTGTCATGCTGTTGTTTATTAAGTAGTTTTCCATTCATTTAGCATTTCAGTACCTGCTTTTCCTGGCACTTGAATATAAAAGCAATGGTATTTGGAGAGAGTTTACTTTTTGTAACTGTGATGGTAAATGATGACGAGAAATGAGGTTTGTGAGGGAACCAGCTGATGCAGCAGTGTCAGGGAAATGCCCCACCACTTATGAGTGCTTTTCAAGTACAAGGTTTACTGGGCAGGTAAAGCAGTAAAACACCACCGTTTGCAAGGAGGAGAGGGACATTGCCTAAATCAGCAGCAGAGTGAGGTCTGCATGGTCAGAATGGAGGGTATAAAGAAAAAGAGGTTAACAAATTCTGAAGAGGATCAGTTGGCACATAGAGGAGATTATTAAACTTCATTTCCATTCCCATTGTGCAGAGAGACAGGGGATTTTTGGGGGATAGCCAGTCTCTGCAGCATCCTGTTTTTATCCCACATTGAAGGGGGAAATTTGCACTGGGAGCACATTCCCTTTTGAGTTGATGAAGGGATTTATTCTGCAAACGCAGGCTGCTTTCTTGGCCCTGCTGCACGTTGCCTCTGCTGTGCTGGACCTCACAGAGCTGCGCAGGAGAGGTTTTGTCTGTCAGATCTGGAAGCATTTTCAGCTTGTTAGATTTTATTTTCCCCAGAACAGAGGTGCCTCTCCAGGGCAATTAAAGGCTGTTACTGTTGAGCTAAAACAGTTGAAAGTCTCATTTAATCACTTTACATGAGGAATTTGATTTTGGTACCATGGCTGTTGAGTCATCCAAGGGTGATTTCCAGGACCTTCTACCTAGCTGTTTTACCATAGTGAGAAATTCAGAGAGCTTATAGGATCGTGGTCATTGATTTCCAGCTAACAGCAGCTCAGTTCAGCTACCATTTCCTTCCTTCTTCCTCACCTGCTGCCACAGCTAACATCTTGTTAATAGGTTTTGGTTAAACACTTTGCCTTTCTTGTCTCTAG
Seq C2 exon
GATGAATTCCCTGTCCGGGAAGATCTCTCTGAAATATCTGATGATGATACCTCATTGGCAAAGCCACCGCAGCCTGTGAAATCAACAGTCCACTCCTTCAAACTGAAAAATGATTCAGACCTCTTTGGTTTGGGTTTGGAAGAAACCGGTCCCAAGGAGAGCAGCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTCAAAGAGGAAAAGCC
R:
CTTCTTCGCTGCTCTCCTTGG
Band lengths:
305-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]