DreINT0123790 @ danRer10
Intron Retention
Gene
ENSDARG00000077653 | rabl6b
Description
RAB, member RAS oncogene family-like 6b [Source:ZFIN;Acc:ZDB-GENE-081104-97]
Coordinates
chr5:26222995-26223614:+
Coord C1 exon
chr5:26222995-26223316
Coord A exon
chr5:26223317-26223430
Coord C2 exon
chr5:26223431-26223614
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTTCTTGTCGTTTGCTCCAGGAA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGCTACTCTGGATTCATTATCACTGGAGGACAAGCCAAAACCTGTCAGCAGGGAGCCACTGATCCAAACCCAGGAGATCATCATCAGCAGTCAGAAAGCGGAGACTTCAATTCTTACTCCCACTCCTTTACACACTACTCCAGCTCTGCAGACGGCATCCGCACATCCTCAAGAACAGGCTGTAAAAGCCAAACCCAGTTCAGCTCAGGCAGAATCCTCAGACTCAGACCCAGACGTACCTGTGGCCGAACAGATGCTCTCGTTTGTCATGGACGACCCTGACTTTGACAGCGAGGAGGAAGTCGTCCAGAAAGTCAGTCAG
Seq A exon
GTACTGGAGTCGTCATGACGATAGAAGTTCACGTTTCACAGACTCTGCATAATTTACTCATTTGGGGTTTGAATATCCAATAAAGAGCTTTTGTTTTCTTGTCGTTTGCTCCAG
Seq C2 exon
GAATCGTTCCCAGTTAGAGATGATCTTCCTGATTTATCTGATGATGATCTAACCGCGGCTAAAATCCCGGAGCCAATGAAGCCTGCTGTGCTCTCCTTCAAAAGTAAAAACGACGGTGACCTCTTTGGCCTGGGAATCGAGGAGAAGTCGATCAAAAGCAAAGACAGCAGTGACGAGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077653:ENSDART00000142753:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=NA C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTCGTTTGTCATGGACG
R:
CTCGTCACTGCTGTCTTTGCT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]