GgaINT1001328 @ galGal4
Intron Retention
Description
NA
Coordinates
chr17:584113-586185:-
Coord C1 exon
chr17:586051-586185
Coord A exon
chr17:584291-586050
Coord C2 exon
chr17:584113-584290
Length
1760 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TTTGCCTTTCTTGTCTCTAGGAT
3' ss Score
12.34
Exon sequences
Seq C1 exon
AAAGTGGTCAAAGAGGAAAAGCCTGAGGAGTCTGACAGTGATCAAGAGGGACCAATAGCTACTCAAATGCTCTCATTTGTTATGGATGACCCAGACTTTGAAAGCGAGGAATCTGACAGCCAGAGGAAGAAAATG
Seq A exon
GTAAATAGCATGCATGAATCGCTGTGCACTGCTGCAGAGCTGAGCATGAAGTGTTGAGGCATCTCAGTGAGCAGGGCTTTCATCTGCTCTCCTGGTCTCTCAGCAGCAGTCACAGCAAGTCAGGTGCTAAGCAACCTGAAGAGGCTGATTTAAGCACAAGCCCATTAATGCTGTGATTGTTGAAGCCATGTGGCAGCTAACTTTGTGCTTGCAGGCTTTAATATGCTGTTTATTCTTAGTAAATTCAGAGCACTTGATCCAGCAGTGTGGAAGGTATGAAATACAAAGCTTATGGATCATTTCACCCAAAGTTTAATATGTAGAAGCGTGTGCATATGAGAGAGAGAGAGAGAGAGCAAGTGAGCTCCTTGCAGTCAATCCAGCAATCAAAAGGCCATAACAAATTTGCATGGCAGTTTCTTATCGAAGCAGGAAAATCTACCTGAGAAGGACTGTCAGTAGCTGGGTTAGCTGTAGTATATCTGTGATGTTCAGGATGTGGGCAGCTGTCCCAATGCAGACTGCAGGGGTTTACCCAAACACAAGGTGCAGCAGAGTCTCTTCTGGAGCTGTTGTGTATTAAAGATGTATAAAACACAAGCATCTTCTCTGGGCTCGTAGGAGCTGTAATTCATTATTTGTGATGAACAGTTGCTTTTCAGATGTACTCCCAGTGTGTAGGTCAGCTATTGTTCAAGAGTGTTTTATATGTTTGCCTCATTCCAGAAACCTGCAGGAGGACGGCTGTCCCAGTTTCTCTGACCTTGGCTGTGTGTCATGCTGTTGTTTATTAAGTAGTTTTCCATTCATTTAGCATTTCAGTACCTGCTTTTCCTGGCACTTGAATATAAAAGCAATGGTATTTGGAGAGAGTTTACTTTTTGTAACTGTGATGGTAAATGATGACGAGAAATGAGGTTTGTGAGGGAACCAGCTGATGCAGCAGTGTCAGGGAAATGCCCCACCACTTATGAGTGCTTTTCAAGTACAAGGTTTACTGGGCAGGTAAAGCAGTAAAACACCACCGTTTGCAAGGAGGAGAGGGACATTGCCTAAATCAGCAGCAGAGTGAGGTCTGCATGGTCAGAATGGAGGGTATAAAGAAAAAGAGGTTAACAAATTCTGAAGAGGATCAGTTGGCACATAGAGGAGATTATTAAACTTCATTTCCATTCCCATTGTGCAGAGAGACAGGGGATTTTTGGGGGATAGCCAGTCTCTGCAGCATCCTGTTTTTATCCCACATTGAAGGGGGAAATTTGCACTGGGAGCACATTCCCTTTTGAGTTGATGAAGGGATTTATTCTGCAAACGCAGGCTGCTTTCTTGGCCCTGCTGCACGTTGCCTCTGCTGTGCTGGACCTCACAGAGCTGCGCAGGAGAGGTTTTGTCTGTCAGATCTGGAAGCATTTTCAGCTTGTTAGATTTTATTTTCCCCAGAACAGAGGTGCCTCTCCAGGGCAATTAAAGGCTGTTACTGTTGAGCTAAAACAGTTGAAAGTCTCATTTAATCACTTTACATGAGGAATTTGATTTTGGTACCATGGCTGTTGAGTCATCCAAGGGTGATTTCCAGGACCTTCTACCTAGCTGTTTTACCATAGTGAGAAATTCAGAGAGCTTATAGGATCGTGGTCATTGATTTCCAGCTAACAGCAGCTCAGTTCAGCTACCATTTCCTTCCTTCTTCCTCACCTGCTGCCACAGCTAACATCTTGTTAATAGGTTTTGGTTAAACACTTTGCCTTTCTTGTCTCTAG
Seq C2 exon
GATGAATTCCCTGTCCGGGAAGATCTCTCTGAAATATCTGATGATGATACCTCATTGGCAAAGCCACCGCAGCCTGTGAAATCAACAGTCCACTCCTTCAAACTGAAAAATGATTCAGACCTCTTTGGTTTGGGTTTGGAAGAAACCGGTCCCAAGGAGAGCAGCGAAGAAGGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGTCAAAGAGGAAAAGCC
R:
TACCTTCTTCGCTGCTCTCCT
Band lengths:
310-2070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]