GgaINT0125763 @ galGal3
Intron Retention
Gene
ENSGALG00000008984 | C9orf86
Description
NA
Coordinates
chr17:966096-968100:-
Coord C1 exon
chr17:967929-968100
Coord A exon
chr17:966146-967928
Coord C2 exon
chr17:966096-966145
Length
1783 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTGTTTGTTTGTTTGAACAGATA
3' ss Score
9.09
Exon sequences
Seq C1 exon
GATGAATTCCCTGTCCGGGAAGATCTCTCTGAAATATCTGATGATGATACCTCATTGGCAAAGCCACCGCAGCCTGTGAAATCAACAGTCCACTCCTTCAAACTGAAAAATGATTCAGACCTCTTTGGTTTGGGTTTGGAAGAAACCGGTCCCAAGGAGAGCAGCGAAGAAG
Seq A exon
GTAAAGGTCACCCTGTTTCCCCTCTTGCTGATCTCATTTGTCAGGAACCAGTTTTCTTCCAAAATGGTTCCAGGGTGTAAGCAAACCAATTTGCACCCTGTAATTTCACGCAGTGCCCTGTGTGAGTCTTTAATGTGGTTTAACACAGCATAAAGAACTTCCTTCAAGTTTTTCCCCTTGGGGGTTGGGGGAACTTGGCTCATCTGTGGCATCAGCCGTTTATTATTTCTGTCCCAGCTGGAAGCAGGCTCACATCTTTCACCTGCTTCTGTCAGGCTTCCTGCTTAGGTTTGCATGCCTGGGAGCTCTGAGGCTCAGCACTGCAGTGTCCACTCCCTCTACATTGAGTTTAGCTCATTGTGAGCAAAATGCTTGGACGTACCTTGCCAGTTTGTTTTACTTTTGGGTAACATGGGGTGAGGTTCTTGTTCTAACCTGAGCATTCCTTTCCCCTCCCCACCACCCACTGAGGGAACAAATCTTAGTTGTGCAAATAATTTCTGCTGTCTTGGCATTTCTACAAAGCATCTCTTTATAGATCTGCCTCTGATGACACTCAGAAAGATGGAAAGTTAGAAACTTCCTAAGGGAAGAAAAAGCTTTAAGCAGTTCAAGTGAGATTTATCTTTGAATAGTTACTCCACCAGTGTAAGGAAGGTCGTGATGGCTTCATTGCCTCGTCACTTTTTGCTGCTGTGCAGCACAACTTGCAATACATACAAGTCTATCTGCAGAGGCCGAGGTCAGTAATTAAACTTCCATCGAGCACTCAATAATCCAGCGTGTTCCTCCTGTCTCCTCTTTCTGGGATAAATATAAAAACAAACCTGTAGTCAGTCAGTTGGAGTTTAAACAGCAGTTTAAGTGTGTGGGTATCAAATACTGCAGTGTGAAATAGGGTGCAGTTACAAAGCATCCCATGTAACAGCCAAACAGATACTCTCCCATTCAAGGAGTCTTTTTGCAAACTCACTGGAAGTTCAGCAATCACAGCAGCAGCTGAGCTGTCAGCCACAGCCATCTGGGACAAACGTTTAGACAGTGGTGGACTCTGGGGCTCATTCAGTGCAGTGAAAATAGCTGCTGCTGTAGAGCATGGCTGCAGCACGGGTGCTTTGGCTCATGGTGACATAGTTTCCACATGCAGCTTTAGCAGAGGTGCGTGCTAGCTTGCCAGGGTGCTCCCATCTTCCGACGTGGTGTCTTGAATGGTCCTTCCGTTACTAGCTGACCAAAAGAAACACAAACCATGCCTGTGGGATTTCCATCTGCCTTCAGGTGTTTAGCAGTCAGAGGCAAATCGCTCCAGTAGTTCTTTAGTTCTGGAATTAGTAGCCTGGTGCCCTGTTCAAATCTTTGGACCAGTTTGTGGAGCTGATGTGTGTCTTTGTTTCTTTGACGGCTGTTGTACTACAAACACCCAGGTCAGTTTTCATAACACAAACAATACAGACAACATAATACTTTTAATTAAACTGGATATATATAGTTAAATGAGAGCCTGTTGCTCAGAGAGTGGTGAGGCCCTGGCACTGCTGCACAGAGCTGTGGGTGCCCAAGGCCATGGATGGGCCCTGGGCAGCCTGAGATGGGAGCAGCCAGCCCACAGCAGGGATGGGGCTGGAGGCCATGAGGGCATTCCAACATAACCGTGCTGTGAGTCTATGAATATTTTTGCATGTGGCTTCAGGACAGAGCATTTTGTTCTGAGGAATAGAGGCAGGGCAGAATTGCATGGGTTGCTGTTTAAATGGTATTTTTTTCTGTTTGTTTGTTTGAACAG
Seq C2 exon
ATAAACACGCTTCTAAGGAGAAGAAGAAGAAAAAGAAGAAAAGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008984:ENSGALT00000014614:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCGGGAAGATCTCTCT
R:
TGCTTTTCTTCTTTTTCTTCTTCTTC
Band lengths:
208-1991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]