MmuINT0022518 @ mm10
Intron Retention
Gene
ENSMUSG00000015087 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25584103-25584944:-
Coord C1 exon
chr2:25584776-25584944
Coord A exon
chr2:25584162-25584775
Coord C2 exon
chr2:25584103-25584161
Length
614 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
AGCTGTCCTTTTCTGTGCAGATA
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGCAGGTTTCCAGTAAGAGAAGACCTCTCTGATGTAACTGATGAGGACACTGGCCCTGCTCAGCCACCTCCACCTTCCAAGCTCCCAGGTGCTTTCAGACTGAAGAATGACTCCGATCTCTTTGGGCTGGGCCTAGAGGAGATGGGACCTAAGGAAAGCAGTGACGAAG
Seq A exon
GTAGGAGGGCCTGGAACCTGCTGGATCCTAGAGGTCCTTGTCTGTGATACTCCTGTGTTTACATTTACATTGCCTATGGTTTCTCTTTTCACCACAGTAATTAGCTGTGAGATTGGTGAAACTGTCACACCAGCTGGCAAATGTGCACCCAAGTGTGGTCCAGAATAGTCATCTAAACACTGTCACTGTCACTCTATCCATGGTTCCCTATGGGTCCTCACCTCTACCAAATGTTCTACATTCCATGCTTTCAGGTGTCCCAAGCCTTTGGGACAGAATTCTTTTGGGAGGGGGAAAAAAAACCACACAGGCTAATAAAAGGTTACTGCAGGGAGAATACCTGGGAATCTCGGGCCGGCCCAGGCTGCCTGGAGAAGTCCTTGGACTTGGGCCATGTCAGCCCAGCAAACAGCTTAGGACTGTACTGTCAGGTTCTCAGCCCCATAGGGAGGGGAAGAAATTACTTGAAGGCTTGTTCAAGACTCACCACCACAAAAATACATAAATTGCCTGTGGGACCACGCCCTGTTGGGAATGGGGTCTCTGCAGCAGTGCCTCTGCCTAACTCTACAAAGTGGTAGCAGGTAGGAGCTCAGCTGTCCTTTTCTGTGCAG
Seq C2 exon
ATAGAGACAGCAAACTTCCCTCTAAGGAGAAGAAGAAAAAGAAGAAGAAAAGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087:ENSMUST00000058137:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGTTTCCAGTAAGAGAAGA
R:
TGCTTTTCTTCTTCTTTTTCTTCTTC
Band lengths:
223-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types